EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS177-05298

Organism

Homo sapiens

Tissue/cell

SK-N-SH_RA

Coordinate

chr12:53472510-53473090

Target genes

Number: 24
Name	Ensembl ID

RP11	ENSG00000257616
KRT78	ENSG00000170423
KRT18	ENSG00000111057
KRT8	ENSG00000170421
AC107016.1	ENSG00000225410
EIF4B	ENSG00000063046
TENC1	ENSG00000111077
SPRYD3	ENSG00000167778
IGFBP6	ENSG00000167779
SOAT2	ENSG00000167780
VTI1BP3	ENSG00000258074
U6	ENSG00000238669
HIGD1AP1	ENSG00000258016
ZNF740	ENSG00000139651
CSAD	ENSG00000139631
ITGB7	ENSG00000139626
RARG	ENSG00000172819
MFSD5	ENSG00000182544
ESPL1	ENSG00000135476
PFDN5	ENSG00000123349
C12orf10	ENSG00000139637
AAAS	ENSG00000094914
PRR13	ENSG00000205352
PCBP2	ENSG00000197111

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr12:53472990-53473000	GCCCCGCCCC	+	6.02
MYCN	MA0104.4	chr12:53472690-53472702	CACCACGTGGCC	+	6.07
MYCN	MA0104.4	chr12:53472690-53472702	CACCACGTGGCC	-	6.07

dbSUPER

Number of super-enhancer constituents: 1
ID	Coordinate	Tissue/cell

SE_56430

chr12:53472238-53475574

u87

Enhancer Sequence

CTGGGAGCCA AAAGTGAGAA AGAGGTGAAG TACTCTTCTC TTCCCATTCC CTAAACACTG 60
GGACAGGGGT TTTCTTGAGG CCTGACATTG CCTTGCACAC GGTAGGTGCT TAGTAAGCCT 120
TGGCTGGGCT GAATTTGATC CCAATACGCA AATTACGACT CTTATGCAGT AGCTACAACC 180
CACCACGTGG CCCAGAAGAG TAGGCACCTG TGGGACAGAC AGCCCTAAGA TTCCACTCCC 240
GGGCACTCAG CCAGGACTCA ACCCCAGGTA GATGCTGGTT GCGCAGACCC CACAGTCTTG 300
GCACCGGCGA GTGGCGGCCC TACTGGGCCC TGTCTCCTCC CCGGGCACGG CCTGATCACT 360
GAGATGAGAC CCGGGAGCAG CCGGGCCCCA GCCCATCCGT GTGCCTACGC CCAGTCTCCC 420
CAGGCCCTGC ACTGGGCCGA GGGTGCAGCA ACAGAAGAAG CCCAGTGACC AGAGCGCAGG 480
GCCCCGCCCC TGGCCCCAGA GCCCCCGCCC AGGACCCCCG CCTTCCGCTT CAGGCTCCGG 540
GGAGATACGA GGCCTCCGGG ACCCCGCCCC CGATCCCCGC 580