EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS176-22232

Organism

Homo sapiens

Tissue/cell

SK-N-SH

Coordinate

chr2:176995670-176996040

Target genes

Number: 12
Name	Ensembl ID

EVX2	ENSG00000174279
HOXD13	ENSG00000128714
HOXD11	ENSG00000128713
HOXD10	ENSG00000128710
HOXD9	ENSG00000128709
HOXD8	ENSG00000175879
HOXD3	ENSG00000128652
HOXD	ENSG00000237380
MIR10B	ENSG00000207744
HOXD4	ENSG00000170166
AC009336.24	ENSG00000226363
AC016739.2	ENSG00000218175

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF263	MA0528.1	chr2:176995748-176995769	CGTTCCCTCTCCCCCTCCTTT	-	6.24
ZNF263	MA0528.1	chr2:176995751-176995772	TCCCTCTCCCCCTCCTTTTCC	-	6.24
ZNF263	MA0528.1	chr2:176995691-176995712	TAAGAAGGGAGAGGGGGAGAA	+	6.26
ZNF263	MA0528.1	chr2:176995754-176995775	CTCTCCCCCTCCTTTTCCTTC	-	6.81

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_30106	chr2:176992394-176998753	Fetal_Muscle
SE_46743	chr2:176992866-176995816	Ovary
SE_53852	chr2:176992239-176996676	Spleen
SE_56668	chr2:176991757-176996576	u87
SE_68578	chr2:176992721-177023513	TC71
SE_68579	chr2:176992721-177023513	TC71

Enhancer Sequence

GGTTGGGATG CATTTTTTTT TTAAGAAGGG AGAGGGGGAG AAATCTGCTT TCATCTCACG 60
TTCTGGCTTT AAAACTCCCG TTCCCTCTCC CCCTCCTTTT CCTTCTTGTG TAGCCACAGT 120
GGCTCTTATT CATAAAGTAA TACAGACTTT TTTTAAAAAA GTAGGAACCA TGTAAAGATG 180
ATGGGGACAG AATAATTGTG AAGACCTCTC TGCTCCTCTT GCCTGCACAC CCTATATATA 240
TATATCGGAG CTAAAGAGCT CTGTGTATAT TTCACCCCGT AGACCCCCGT TCCACAAACC 300
TCCAGCAACA TGCAGAGGTA CCATAACATT TTTAAAACTT TTATTCCCCC CCCCTTTTTT 360
TTTGTTTTAA 370