EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS176-19389

Organism

Homo sapiens

Tissue/cell

SK-N-SH

Coordinate

chr19:56134930-56135840

Target genes

Number: 34
Name	Ensembl ID

TNNI3	ENSG00000129991
PTPRH	ENSG00000080031
TMEM86B	ENSG00000180089
PPP6R1	ENSG00000105063
HSPBP1	ENSG00000133265
BRSK1	ENSG00000160469
TMEM150B	ENSG00000180061
SUV420H2	ENSG00000133247
COX6B2	ENSG00000160471
FAM71E2	ENSG00000180043
TMEM238	ENSG00000233493
RPL28	ENSG00000108107
UBE2S	ENSG00000108106
SHISA7	ENSG00000187902
NAT14	ENSG00000090971
SBK2	ENSG00000187550
AC008735.15	ENSG00000231274
ZNF579	ENSG00000218891
FIZ1	ENSG00000179943
ZNF524	ENSG00000171443
ZNF865	ENSG00000261221
ZNF784	ENSG00000179922
ZNF580	ENSG00000213015
ZNF581	ENSG00000171425
CCDC106	ENSG00000173581
U2AF2	ENSG00000063244
EPN1	ENSG00000063245
AC010525.2	ENSG00000211571
AC010525.1	ENSG00000203305
7SK	ENSG00000222524
NLRP9	ENSG00000185792
RFPL4A	ENSG00000223638
NLRP4	ENSG00000160505
NLRP11	ENSG00000179873

TF binding sites/motifs

Number: 9

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr19:56135507-56135517	GCCCCGCCCC	+	6.02
KLF5	MA0599.1	chr19:56135688-56135698	GCCCCGCCCC	+	6.02
Pou2f3	MA0627.1	chr19:56135534-56135550	AATTATGCAAATTATC	+	6.07
SP1	MA0079.4	chr19:56135504-56135519	GAGGCCCCGCCCCTT	+	6.18
SP1	MA0079.4	chr19:56135622-56135637	CAGGCCCCGCCCACC	+	6.67
SP2	MA0516.2	chr19:56135621-56135638	CCAGGCCCCGCCCACCA	+	6.14
SP3	MA0746.2	chr19:56135624-56135637	GGCCCCGCCCACC	+	6.14
SP4	MA0685.1	chr19:56135504-56135521	GAGGCCCCGCCCCTTAC	+	6.23
SP4	MA0685.1	chr19:56135622-56135639	CAGGCCCCGCCCACCAC	+	6.38

dbSUPER

Number of super-enhancer constituents: 6
ID	Coordinate	Tissue/cell

SE_68542	chr19:56135499-56168361	TC71
SE_68543	chr19:56135499-56168361	TC71
SE_68544	chr19:56135499-56168361	TC71
SE_68545	chr19:56135499-56168361	TC71
SE_68546	chr19:56135499-56168361	TC71
SE_68547	chr19:56135499-56168361	TC71

Enhancer Sequence

CTCAAAACCC TCCAGTGGCT CCAAATGACT TATCCCAAAT CGTCACTATA ATATCTGTGG 60
CGATGTAGCT CCACTTATCT CTCTGACCCC AGCTTAAACA TAAGCCGGCA CCCAGCTGAC 120
TTCTCTCGTC TAAATTTAGC TGCCCCACCC CTACTCTTGG CTCAATTTAT AGAAATTGGC 180
TCAATTTTTA TTTCCTTTAT AGAACATATC ACAGTAACTC TCCTTTATTG TCTCTCTCCT 240
CTCAAGAGAC TGCAGGCTCC AAAAGAACAC AACCCTTGTC TGTCTTGGTC ACTTCTCTAT 300
TTACAGAGCC GAAGTAGGAG CTCAGTAAAT GTTTGTTGAA TGAATGAATG TCCTCAATTA 360
GTCTAATTCT GAGTGGGGTA ACGTGGAGGA AGTTCCAAAG TCACCTAGAC CACCCACTTC 420
TACCCCCAAA TTCTCCCTTG GGCATTCGAG AAGCATCACT AAGACCCTTG AAGAATTATC 480
CCCTACCCCG ACATAGGTGC TCCAATCATA ATCCCCCACG TTTTTCAGGG TCACCTTCCC 540
AACCTTCTAC CCTAGAATTA GCCCTAGAAT TTATGAGGCC CCGCCCCTTA CAAGGCTCCA 600
CCCAAATTAT GCAAATTATC CCTGGTAAGC CCCCTTCCCT GGACCCAAAC CCGTCCCACA 660
AGACAACACC GTCCTCAGAC TCCGCCCCCA TCCAGGCCCC GCCCACCACC CATAGGTCCC 720
TCCCCCACCC CGCCCACCAT GACATAGTCT CCTCCCCTGC CCCGCCCCTC GCGAAACCAC 780
AAGAAGCCCC ACCCCCAGGG CCATAGCACT AAATACCTCC CTCGCCCACC CCCTCATAGG 840
CCACGCCCCG GACCCGCCCC CCACACTACG ACCTCCTCCC ACCTCGAGCC CCACGCCCAG 900
GCCCCTTCCT 910