EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS176-00504

Organism

Homo sapiens

Tissue/cell

SK-N-SH

Coordinate

chr1:28834670-28835340

Target genes

Number: 20
Name	Ensembl ID

MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RP1	ENSG00000229820
U6atac	ENSG00000221216
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
snoU13	ENSG00000238821
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RP11	ENSG00000229388
RNU11	ENSG00000209804
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Arid5a

MA0602.1

chr1:28835019-28835033

ATTAGCAATATTGG

6.54

dbSUPER

Number of super-enhancer constituents: 14
ID	Coordinate	Tissue/cell

SE_13857	chr1:28831352-28838041	CD34_Primary_RO01536
SE_15100	chr1:28831392-28838103	CD4_Memory_Primary_7pool
SE_21360	chr1:28831370-28837817	CD8_Memory_7pool
SE_34487	chr1:28831462-28837999	HCT-116
SE_35630	chr1:28831533-28837920	HepG2
SE_39972	chr1:28831732-28838143	K562
SE_65238	chr1:28831521-28838064	NHEK
SE_68319	chr1:28831355-28846288	TC32
SE_68320	chr1:28831355-28846288	TC32
SE_68321	chr1:28831355-28846288	TC32
SE_68525	chr1:28831484-28846339	TC71
SE_68526	chr1:28831484-28846339	TC71
SE_68527	chr1:28831484-28846339	TC71
SE_69103	chr1:28831754-28837755	H9

HEDD

Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder
Number of disease enhancers: 2
Chromosome	Start	End

chr1	28834885	28834975
chr1	28834991	28835047

Enhancer Sequence

TGGTGAGTAA ATCTGCTAAT TGTTTTTTGC TTATCAGCTC TTTGTCAATG ATTTCTGTAA 60
TGGAAATAGG ATTGAAGAGA CTTTTATTCT AGTTGGTCAG GATTTACCTC TGAGGCATTT 120
AATCATTCTC AGAGCAATAG CCAAATATCG ACTTTGCTGC ATTTTTGTAG GCATGTTGAC 180
ATAACTTCAA CATATGCTCT GTTCTGTAAA AATTGCTTTT TTTAGTCAGC TCATTAAAAG 240
TGCAAAGTAG TAAAAGCTGC CCTAGTGAAC TGTAGGAAGC CTAATTGGCT TTATCTACAT 300
GTGTAGCCTG AGCTGAGAAA GATACTAGCC CTTGAAAATA CTGTGGGTGA TTAGCAATAT 360
TGGATTTGTC GGTTACTCCA ATTCCTCACT AATGAGCATT CCAACGTGGA TACCCTGGGA 420
GGTCACTCTC CCCAGGCTCT GTCCAAGTGG CATAGGGGAG CTTAGGGCTC TGCCCCATGA 480
TGTACAGTCC CTTTCCACAA CGTTGAAGAT GAAGCTGGGC CTCGTGTCTG CGCCTGCATA 540
TTCCTACAGC TTCCCAGAGT CCTGTGGACA ATGACTGGGG AGACAAACCA TGCAGGAAAC 600
ATATCTAGTA TACTAGATTT TAAGTTGAAG TAGGATCTTC AGGAGTCTAA TCATTATTTC 660
TTTTCTTTTA 670