EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS176-00247

Organism

Homo sapiens

Tissue/cell

SK-N-SH

Coordinate

chr1:17287630-17287990

Target genes

Number: 7
Name	Ensembl ID

RP11	ENSG00000223643
CROCC	ENSG00000058453
RP1	ENSG00000226526
MFAP2	ENSG00000117122
ATP13A2	ENSG00000159363
SDHB	ENSG00000117118
PADI2	ENSG00000117115

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF16	MA0741.1	chr1:17287678-17287689	GCCCCGCCCCC	+	6.02
KLF5	MA0599.1	chr1:17287678-17287688	GCCCCGCCCC	+	6.02
NKX2-5	MA0063.2	chr1:17287864-17287874	CTCAAGTGGT	-	6.02
SP1	MA0079.4	chr1:17287675-17287690	GAGGCCCCGCCCCCA	+	6.44
SP2	MA0516.2	chr1:17287765-17287782	CTTAGCCCCGTCCCCTC	+	6.4
SP4	MA0685.1	chr1:17287675-17287692	GAGGCCCCGCCCCCACA	+	6.56

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

SE_47084	chr1:17287664-17287913	Ovary
SE_69143	chr1:17287003-17288001	H9

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I016960

chr1

17286781

17288206

Enhancer Sequence

GGCAGTGCCG CGCGCAGGGA AGGGGGGAGG TGGGCGGGCC GCACTGAGGC CCCGCCCCCA 60
CATGGCAGGG TGTTTTTGTT TTTGTTTTTG TTTTTTTTCA AGGAGCCCAC CACACCTCTC 120
CACTGAGGTC CACTTCTTAG CCCCGTCCCC TCACCGAGAC CCCTCCCTTC ACTGATCTGT 180
GCTTCTCAAG GGCGCTTCTT TTTTCTTTAG ACCAGGCCTC ATCTGTTTCC CGGGCTCAAG 240
TGGTCCTCCC TCCTCAGCCT CCTGAGTAGC TGGGACTACA GGTGTGCCAC CACGCCCAGC 300
TAATTTTTGT AGTTTTTGTG GAGACGGGGT CTCACTATGT TGCCCAGGCT GGTCTTAAAC 360