EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS161-00070

Organism

Homo sapiens

Tissue/cell

PC3

Coordinate

chr1:2342690-2343820

Target genes

Number: 16
Name	Ensembl ID

RP11	ENSG00000226969
PRKCZ	ENSG00000067606
C1orf86	ENSG00000162585
AL590822.1	ENSG00000203301
SKI	ENSG00000157933
RP4	ENSG00000238240
AL513477.1	ENSG00000178642
MORN1	ENSG00000116151
RER1	ENSG00000157916
PEX10	ENSG00000157911
PLCH2	ENSG00000149527
PANK4	ENSG00000157881
TNFRSF14	ENSG00000157873
RP3	ENSG00000238164
FAM213B	ENSG00000157870
MMEL1	ENSG00000142606

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Zfx

MA0146.2

chr1:2342915-2342929

CCCGCCTCGGCCTC

6.01

dbSUPER

Number of super-enhancer constituents: 4
ID	Coordinate	Tissue/cell

SE_24340	chr1:2343111-2346064	Colon_Crypt_2
SE_25169	chr1:2343208-2346524	Colon_Crypt_3
SE_27514	chr1:2343120-2346479	Esophagus
SE_41711	chr1:2342986-2346400	LNCaP

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I002408

chr1

2339732

2342704

Enhancer Sequence

TTGAGATGGA GTCTCACTCT GTTGCCCAGA CTGGAGTGCA GTGGCACGAT CTTGGCTTAC 60
TGCAACCTCC GCCTCCCGGG TTCAAGTGAT TCTGTCTCAG CCTCCCAAGT AGCTGGGATT 120
ACACGCACGC GCCACCACGC CCTGCTGATT TTTGTATTTT TAGTAGAGAC GGGGTTTCAC 180
CATGTTGTGT AGACTGGTCT CGAACTCCTG ACCTCAAGTG ATCCACCCGC CTCGGCCTCC 240
CAAAGTGCTG GGATTACAGG CGTGAGCCAC CACACCCGGC ATCTTTTTTT TTTCGTTTTT 300
TAATCGGTGA TGGGGTCTGG CCCCGTCGCC CAGGCTGGAG TGCAGCGGCA CAATCATGGC 360
TCACTGCAGC CTCATCCCTC GGGCTCAGGC GATTCTCTTG CCTCAGCCTC CTGAAGAGCT 420
GGGATTACAG ACGCCGCCAC CACGTCCGGC TAATTTTCAG ATTTTTTGTA GAGACGGGGT 480
CTTGCCATGT TGCCCAGGCT GGTTTCAAAC TCCTGGGCTC AAGCGATCCT CCCGCCTCTG 540
CCTCCCAAAC TGCTGGGATG ACAGGTGCTG CTTCATTGAG TACACTGGCT TCTGTACTCA 600
GCTCCCGGCC TGGTGAGGCA GGCAGGGCCT GGCTGAGCCT ACACTGGGGT CAGCAGGGCG 660
AGGGGCCTGG GCTGCTGCTC AGGCCTAGGA AAGGCCGGGG TCAGTGTGAA CCGGACCGAG 720
GTATGAGGCG TTCGCGCCGC GGGCGCTCTG ACCCCTCTGC TCACAGGGGA GGATCGGAGG 780
GAGGCTTGAA GCACTTGCCA AGGCCTCACA CCTGGAGGGG ACAGAGTCTT CCCCAGCCGC 840
TGGCGTCAGC TGGACCTGCC CTGAGCTGGG GACGGGAAGG GCTTGGGCGG GAACTGGAGG 900
CCCACGCAGG TCCCCCGCGG TGTCTGCGGC CTGTGCCTCT GGGGCCACCT GGCCAGGGAG 960
GGCAGGAGGT GCCCCGCACA TCCCTGAATG GCCGCAGGGC AGGCGAAGGA GACTGCCGGG 1020
TCCCAGGTTG TGGGACGGGC CCAGGCGACC GTGACCACAC ACGGCAGACA CCCCGCCTCC 1080
ATGAGGGGCA ACACCCCCTG GGCCGCTCGC GAGGACGTCC GGCCGCGCCC 1130