EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS155-00003

Organism

Homo sapiens

Tissue/cell

Ovary

Coordinate

chr1:1364970-1365530

Target genes

Number: 17
Name	Ensembl ID

SDF4	ENSG00000078808
B3GALT6	ENSG00000176022
UBE2J2	ENSG00000160087
RP5	ENSG00000230415
SCNN1D	ENSG00000162572
PUSL1	ENSG00000169972
ACAP3	ENSG00000131584
CPSF3L	ENSG00000127054
GLTPD1	ENSG00000224051
DVL1	ENSG00000107404
MXRA8	ENSG00000162576
CCNL2	ENSG00000221978
RP4	ENSG00000224870
MRPL20	ENSG00000242485
ANKRD65	ENSG00000235098
VWA1	ENSG00000179403
ATAD3C	ENSG00000215915

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

FOXA1	MA0148.4	chr1:1365246-1365262	GTTTGTTTACTTAGAG	-	7.2
FOXP2	MA0593.1	chr1:1365247-1365258	TTTGTTTACTT	-	6.62

dbSUPER

Number of super-enhancer constituents: 9
ID	Coordinate	Tissue/cell

SE_06548	chr1:1363395-1374936	Brain_Hippocampus_Middle
SE_07177	chr1:1359555-1373177	Brain_Hippocampus_Middle_150
SE_27377	chr1:1364771-1372485	Esophagus
SE_28450	chr1:1364670-1371175	Fetal_Intestine
SE_30150	chr1:1364545-1371040	Fetal_Muscle
SE_32015	chr1:1364846-1372130	Gastric
SE_33709	chr1:1364422-1373917	H2171
SE_43332	chr1:1364851-1372426	Lung
SE_67118	chr1:1364422-1373917	H2171

Enhancer Sequence

GAACGTTTGG TTGTTTAATT GTCAGCTGTT ATCGGAGACA ATTCTGAGGT CCAACTTGGG 60
GATGCTTCCC TCCAGAGACT ATTCCCCTTT TCCAGGCGAG ACCACCCTCG GCCCCCTCAG 120
TGACCCTTGA GACCCCTGGT TTAAGCAGCC CCTAGGCAGA GAAACATACT TGTTCCCTGG 180
CCGCAGGCTG GCTCTCTGTC CCTGTGTGTG TCCAGGGAGT TATCTGCTTT CCCAACCACT 240
TCCCTTCATC ATCCAGGCCT CCACACTACT CTGTCTGTTT GTTTACTTAG AGACAGAGTC 300
TTGCTCTGCC GCCCAGTCTG AGTGCAGTGG TGAGCTCCTA GCTCTCTGCA GCCTCGCCCT 360
CCCAGGCTCA AGTGATCCTC CTGCCTCAGC CTCCCAAGTA GCTGTGACTA GAGTGCACCA 420
CCACACCCAG CTAATTTTAA ATTTTTTTGT AGAGACGGGG TCTCATCATG TTGCCCAGGC 480
TGGTCTCGAA CTCCTAGGCA CAAGCAATCC TCTCGCCTCA GCCTCCTAAA GTGTTGGGAT 540
TACAGGCATG AGCCACCCCA 560