EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS139-01855

Organism

Homo sapiens

Tissue/cell

Myotube

Coordinate

chr1:55525340-55527040

Target genes

Number: 5
Name	Ensembl ID

PCSK9	ENSG00000169174
USP24	ENSG00000162402
GYG1P3	ENSG00000231095
GOT2P1	ENSG00000231900
7SK	ENSG00000199831

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr1:55526541-55526562	GTGTGGTTTCTCTTTCCATCT	+	6.04
TP53	MA0106.3	chr1:55525909-55525927	AACATGCCCAGGCAGGTA	+	6.15
TP53	MA0106.3	chr1:55525909-55525927	AACATGCCCAGGCAGGTA	-	6.72

GeneHancer

Number: 2
ID	Chromosome	Start	End

GH01I055060	chr1	55526503	55526549
GH01I055061	chr1	55526610	55528744

Enhancer Sequence

GAGGCTGGGC TTGCCCTGGG GTGAGGAGGG GTCTCTTTCT CCTTATGCAC CCACTGCCCG 60
CGAGGCTTGG TCCTCACAAG TGTGATCCAT GAGACTCAAG CCTGACTTGC AGTTCCATAC 120
TCTGGTTCTG CCACTTCCAT GCCCTTTGAG CCTGGGCAGG TGACCTTACT TCTCCTCATC 180
TCAGCTTCCT CCTCCATAAG AGGGAAAAAG GTATTACCTG CCTCATTGTG TTGCAAGGAG 240
ATGGGCAGCA TCTAGGGCAC TGGCCTGGAG TATCGCAGGT GCTTTGCCTA AGGTGGTGCA 300
GTCCAGGAGA GGCAGCTCCA GAGAGAGGCC CCCGGCTGGG GCTGAAAGGA GGGCAGACCT 360
CGGTTTGAAT TTCACCCTGC CGCTCTATAG CTGTGTGACT TGGGCAAATT ACTTAACATC 420
TCTGTATGAG GAAATGATGA GTGCTAAGCA CTTAGCTTAG TGCCGGGACA ATATAAATTC 480
TAGCTATCGT TACTATTGTT TTCATCACCC GTTGCTTTAA AATCCAGCCT CTGGTATAGG 540
CAACTATTGA CGGGCTACCC TGTGTCGAAA ACATGCCCAG GCAGGTAGCA GGAAGTCACA 600
GATGGGGACC TCTTGGGGCA TCAAGGGATG GTGCCCTGAG GCTGAGCTGT TCTGGTTGGG 660
TGGAGCATGA GAGGTCTGGG AAGACAGTGG GACTCCAGCC TGGAATAAGA GGCTCAGAGT 720
TGATTCTCGT CTGAGCACGT CCAGGGGAAC CACTGAGGGT TTGGGAACAG GAGAGTGAGG 780
GTGAGAACCT GGTTCTGGGC ACAGCAGGCT GGCATGTAGG ATGGATGTTC AGGAAAGATG 840
AGCATAGTCA GGTGGCTGGT GCCCTTGTCC AGGGGAGAGG CTCCGTCAGG TTCAGGGGTC 900
CTGGCTTGGA GGGAAGTCCG CCATGCTCTA ATCACGCTCC CCTTTGGAAG TGCTCAGCCG 960
ATGAGCTCAC AGGCACATGT CAGTTTGAAG TCATGGAATC TGACTCCATG AAGCGCACCT 1020
CAAAGAGCAC CATTTTGCAG CTAAGGGAAC TGCAGGCTGG ACATGCTGAG TGGCTGCCCC 1080
GAGCCCTTGC AGCTAGGACA TAGAGAATGC TAGTAACCAC AACCCTACCA TGTTCAGAGC 1140
ACATGCCAGG CTCCATGCTG GGGCTTCGCA CGTGTCATCT TCACAGTGTC CCTGTGAGTA 1200
GGTGTGGTTT CTCTTTCCAT CTTACAAATG AGTAAACAGA GCCTCAGTGT AGCTAAGTAA 1260
CCACTATTTT AGGTTTCTTA GCCAATGGGT GTGTCTGACT CCTAAGCCCA TGGAGGGCAT 1320
TCTGAGGTGG TTCAGACAGA CCCCGGCTTA CCCTTGAACT TCTGCCTGCT GGCTGCATAG 1380
GGAGGGGCTG GGGGGAGTTT GAGCATCTCA GGCCATAGAG CCCCTGCCTC ACTGTCTCCA 1440
TCTCTGGGTG GAAAGATGGT GTTTTCCCTG AGAAACTAAG GCTCAGAGAG GTTGAATGGC 1500
TCTCCCAAGG TCACACAGCT GGTCAGCTGC AGAGTTGAGA ACACAGGAGT CCTGGTGCTC 1560
AGGCCAGCAT CTCTTTTTTT CTTTGAGTTG TTTCTAGGTT TCCTAGCTCT TGCCTCAGAC 1620
CTTAAAGAGA GAGGGTCTGA TGGGGATGGG CACTGGAGAC GGAGCATCCC AGCATTTCAC 1680
ATCTGAGCTG GCTTTCCTCT 1700