EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS134-00922

Organism

Homo sapiens

Tissue/cell

Mesendoderm

Coordinate

chr1:36614270-36614690

Target genes

Number: 13
Name	Ensembl ID

EIF2C1	ENSG00000092847
TEKT2	ENSG00000092850
ADPRHL2	ENSG00000116863
COL8A2	ENSG00000171812
TRAPPC3	ENSG00000054116
MAP7D1	ENSG00000116871
THRAP3	ENSG00000054118
SH3D21	ENSG00000214193
AL591845.1	ENSG00000116883
FAM176B	ENSG00000142694
STK40	ENSG00000196182
LSM10	ENSG00000181817
MRPS15	ENSG00000116898

dbSUPER

Number of super-enhancer constituents: 46
ID	Coordinate	Tissue/cell

SE_01115	chr1:36614212-36617178	Adrenal_Gland
SE_01636	chr1:36614124-36617972	Aorta
SE_02424	chr1:36614132-36617754	Astrocytes
SE_04066	chr1:36614116-36618067	Brain_Anterior_Caudate
SE_05024	chr1:36613991-36618235	Brain_Cingulate_Gyrus
SE_05887	chr1:36613670-36630723	Brain_Hippocampus_Middle
SE_06862	chr1:36613915-36618019	Brain_Hippocampus_Middle_150
SE_07920	chr1:36613978-36615243	Brain_Inferior_Temporal_Lobe
SE_09456	chr1:36613763-36619415	CD14
SE_11597	chr1:36613684-36618246	CD20
SE_12186	chr1:36614245-36618013	CD3
SE_13759	chr1:36613983-36618075	CD34_Primary_RO01536
SE_14981	chr1:36613930-36618242	CD4_Memory_Primary_7pool
SE_15718	chr1:36614083-36618178	CD4_Memory_Primary_8pool
SE_16804	chr1:36614288-36618050	CD4_Naive_Primary_8pool
SE_17062	chr1:36614040-36618082	CD4p_CD225int_CD127p_Tmem
SE_17467	chr1:36614035-36630739	CD4p_CD25-_CD45RAp_Naive
SE_17936	chr1:36613560-36618703	CD4p_CD25-_CD45ROp_Memory
SE_18752	chr1:36613727-36618937	CD4p_CD25-_Il17-_PMAstim_Th
SE_19343	chr1:36614045-36618282	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20283	chr1:36614199-36618425	CD56
SE_21126	chr1:36613700-36618157	CD8_Memory_7pool
SE_22499	chr1:36614167-36619087	CD8_primiary
SE_25992	chr1:36613795-36618104	Duodenum_Smooth_Muscle
SE_26652	chr1:36614047-36617986	Esophagus
SE_29723	chr1:36614192-36617963	Fetal_Muscle
SE_31707	chr1:36614490-36617906	Gastric
SE_35879	chr1:36614007-36618282	HMEC
SE_37181	chr1:36613913-36618527	HSMMtube
SE_38303	chr1:36614113-36618078	HUVEC
SE_40420	chr1:36614160-36617689	K562
SE_42156	chr1:36614049-36618057	Lung
SE_44877	chr1:36614190-36617929	NHLF
SE_45971	chr1:36613995-36618034	Osteoblasts
SE_48111	chr1:36614081-36617954	Psoas_Muscle
SE_48599	chr1:36614066-36618049	Right_Atrium
SE_50384	chr1:36614192-36618048	Sigmoid_Colon
SE_51235	chr1:36613940-36618216	Skeletal_Muscle
SE_52691	chr1:36614117-36617984	Small_Intestine
SE_53482	chr1:36614113-36618137	Spleen
SE_54589	chr1:36614130-36618269	Stomach_Smooth_Muscle
SE_56203	chr1:36614108-36615263	u87
SE_62466	chr1:36605507-36654228	Tonsil
SE_64044	chr1:36614252-36618040	HSMM
SE_64339	chr1:36614138-36615329	NHEK
SE_65351	chr1:36613670-36618263	Pancreatic_islets

Enhancer Sequence

CCATATGGTG TCCAAACTAT TCCCTGGGAA AGAAGGGAGC CACCCACTCC ATTAGAGGGG 60
CACCACTCAC TGCTTACTCT GGCCCATCTC TTATTCCATT GAATAAAACG TTCCTTTCTG 120
GCACGACCAG TATCTGAACA TCTCTCACAA TACCCACGCC ACAGTACGAG ACACTGTAGC 180
CTAAGAGTAA AGCCTAACAG TCAGCTCCTA GCATTAGCTT TGGAGTTAAA CACGGGTCCA 240
AATCCTAACT TCCCAGGTGT AAATATGGGC AAATTACGTA AGCTCTCCAA GCTGTAAAAC 300
GGCAATGTTA TCCATCTGAT AGGGGCTACT CTGCAGATTA ACTGAGATGC TGTAACGTGC 360
GTGGCCCGGT GCCCAACACA TAGTAAGAGA GAAGTTAAGT GGCAGTTATT GGTATTTATT 420