EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS134-00722

Organism

Homo sapiens

Tissue/cell

Mesendoderm

Coordinate

chr1:29045160-29045800

Target genes

Number: 23
Name	Ensembl ID

RP5	ENSG00000228589
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RP1	ENSG00000229820
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
OPRD1	ENSG00000116329
EPB41	ENSG00000159023
RP4	ENSG00000225616
TMEM200B	ENSG00000253304
SRSF4	ENSG00000116350

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NEUROD2	MA0668.1	chr1:29045682-29045692	GCCATATGGT	+	6.02
NFE2L1	MA0089.2	chr1:29045568-29045583	AACGCTGAGTCATGC	-	6.2

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028718

chr1

29045242

29045713

Enhancer Sequence

TTTATGTATT TTATGCATTG AAAAACATTA TTTAAGAATT GGTTCATAGG TTTCAGCAGA 60
CTGCCAAAGG CACAAACAAG CAGCTCTCCT TTACTGAGGT ACTGAAACAG ATCCTACTGC 120
GTAAGTGCTG TGTGTGATAG GGCTATTGGC TAGGAGCTGA GAGAACAAAG CATGAAGTGC 180
CTAACCCAGC TTAGCGGTGT AGAGGTGGGG TCAGCAAATA AGGGAGATCT TCCTGGAGAA 240
GGCATATACC TAAGCTGATT TAGGAGAGAC CACTTTTGGC TAGGTTTATT GTACTACTTG 300
ATTTTCAAGT AATTGGGCTT ATTTATTCTA GAGAAAAAGT CTTCAGTCTC TTGCTTCTGC 360
CTGCAAAGCA AGGCAGAGTC AGCAACATGG GCAGTCTCCC CACTGGAGAA CGCTGAGTCA 420
TGCATGGGCT TCTCCAAGTT TCCATCAGAT GGGATCCAGT GTTGAATCCA GTGCAGGACT 480
GGAGTCTAGC TGGCAAAGGG TAAATGCCCC CAAAGCCTTC CTGCCATATG GTTTCCACGA 540
AGGCCTGAGA GTCAGCTGTA CAACTGTCTT GTCTTGGCCA TGTCCCTGTT TGGTCCCTGC 600
CTTGTTCTCT TCCCTTTCTC AATTTCCAAG CTCCACCCAC 640