EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS134-00713

Organism

Homo sapiens

Tissue/cell

Mesendoderm

Coordinate

chr1:28782680-28782940

Target genes

Number: 23
Name	Ensembl ID

RPA2	ENSG00000117748
XKR8	ENSG00000158156
AL512288.1	ENSG00000240750
EYA3	ENSG00000158161
RP5	ENSG00000228589
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
RP1	ENSG00000229820
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
OPRD1	ENSG00000116329
EPB41	ENSG00000159023

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

BHLHE41	MA0636.1	chr1:28782762-28782772	GTCACGTGAC	+	6.02
BHLHE41	MA0636.1	chr1:28782762-28782772	GTCACGTGAC	-	6.02
MITF	MA0620.2	chr1:28782758-28782776	GCATGTCACGTGACCAGA	+	6.9
MITF	MA0620.2	chr1:28782758-28782776	GCATGTCACGTGACCAGA	-	6.9
USF1	MA0093.2	chr1:28782762-28782773	GTCACGTGACC	+	6.14
USF2	MA0526.2	chr1:28782760-28782776	ATGTCACGTGACCAGA	-	6.08

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028455

chr1

28781939

28783409

Enhancer Sequence

CTTGCAACTG CCCTGCTTCT GGGGAGGTCT CAGGAAACTT ACAATCATGA ATCATGACAG 60
AAAACCAACC AGGAATAAGC ATGTCACGTG ACCAGAGCAG GAACAAGAGA GCAAAGAGGG 120
AGATGCCACA TACTTTTAAA CGACCAGATC TCACGAGAAC TCACTCACTA TTGCTAAGGC 180
AGCACCATAT GGATGGTGCT AAACTATTCA TGAGAAATCC ACCCCCATGA TCCAGTCACC 240
TCCAACCAGG CCCCACTTCC 260