EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS134-00021

Organism

Homo sapiens

Tissue/cell

Mesendoderm

Coordinate

chr1:1709040-1709720

Target genes

Number: 24
Name	Ensembl ID

RP5	ENSG00000240731
DVL1	ENSG00000107404
CCNL2	ENSG00000221978
VWA1	ENSG00000179403
ATAD3B	ENSG00000160072
ATAD3A	ENSG00000197785
TMEM240	ENSG00000205090
AL645728.2	ENSG00000215791
SSU72	ENSG00000160075
C1orf233	ENSG00000228594
MIB2	ENSG00000197530
MMP23B	ENSG00000189409
CDK11B	ENSG00000248333
SLC35E2B	ENSG00000189339
MMP23A	ENSG00000215914
CDK11A	ENSG00000008128
RP1	ENSG00000227775
SLC35E2	ENSG00000215790
NADK	ENSG00000008130
GNB1	ENSG00000078369
CALML6	ENSG00000169885
TMEM52	ENSG00000178821
PRKCZ	ENSG00000067606
C1orf86	ENSG00000162585

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF263	MA0528.1	chr1:1709043-1709064	TGGGGAGGAGGGATGGGAGGG	+	6.14
ZNF263	MA0528.1	chr1:1709046-1709067	GGAGGAGGGATGGGAGGGTGG	+	7.41

dbSUPER

Number of super-enhancer constituents: 11
ID	Coordinate	Tissue/cell

SE_01401	chr1:1708234-1713232	Adrenal_Gland
SE_09353	chr1:1706337-1715519	CD14
SE_24151	chr1:1709019-1713411	Colon_Crypt_2
SE_24972	chr1:1708435-1715328	Colon_Crypt_3
SE_32018	chr1:1708920-1715381	Gastric
SE_41662	chr1:1709212-1711084	LNCaP
SE_50504	chr1:1708166-1715310	Sigmoid_Colon
SE_53732	chr1:1708121-1715326	Spleen
SE_60798	chr1:1706583-1715514	DHL6
SE_62054	chr1:1706412-1732343	Toledo
SE_69065	chr1:1709133-1715317	H9

Enhancer Sequence

GCTTGGGGAG GAGGGATGGG AGGGTGGGGG TGGTCCTTGG CCTGGGAAGG AAAACTCCAC 60
CAGGCCTTCG GAGCTGGGCA CGCCCTGTTC CCACAATTAA GAAAAAAAAC GACGACCTAG 120
AGCTCAAGGC CGGTGCTGAC ATCTGACCTA CTGGATGGCA GCCGCCTGTA GGAACATCAC 180
CATAGACTAT TGGAATTTTC TGGCAAGTAC TGGGCACTAA ATCAGAGATG TGTTTTTAGA 240
GAATTCCATG CCAATACTGC TGTATAGAAT CTTTTATTCA TACTTTCCCA CTAGGTTTGG 300
GCCCCTCTAA GCTTTCACGA GTCAAAGACC CCTCCTGCTT GCTGAAACCA CCCACGGAAG 360
GCCGGACACC GAGGACCTGG CCGCCCAAGC AGAGGCGACT GACAAGCGCG GTCCGGGCTG 420
GACGGCCCCA CCTTCCCCGC CCGGGAGAGC CAGGCCGGAC AGCGGCCTCC CTCAGACCCG 480
TCCCCAAGGC CGAGCCTCGC CCTGGGCCGT GCTGGTGCCC CATTCGGGAC GGAGCGGTGG 540
CCCGTCAGCA CTTCCACGGC CTCCTCAGCA GGCCAGATGG GCAGGGCCGG CCTGGTGTCT 600
CCCCGCCTGG CCGCGCGCTC GCGGGCAGCG ATGACCCCAG GCAGCGGGCG ACCCCAGGCG 660
GACGGCAGGC CGGGTCTGCT 680