EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS133-14812

Organism

Homo sapiens

Tissue/cell

melanoma

Coordinate

chr19:6423260-6424460

Target genes

Number: 19
Name	Ensembl ID

NRTN	ENSG00000171119
NDUFA11	ENSG00000174886
RANBP3	ENSG00000031823
RFX2	ENSG00000087903
MLLT1	ENSG00000130382
CLPP	ENSG00000125656
ALKBH7	ENSG00000125652
PSPN	ENSG00000125650
GTF2F1	ENSG00000125651
KHSRP	ENSG00000088247
SLC25A23	ENSG00000125648
DENND1C	ENSG00000205744
TUBB4A	ENSG00000104833
TNFSF9	ENSG00000125657
CD70	ENSG00000125726
C3	ENSG00000125730
GPR108	ENSG00000125734
TRIP10	ENSG00000125733
SH2D3A	ENSG00000125731

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Arntl	MA0603.1	chr19:6424390-6424400	GCACGTGACC	-	6.02
Foxd3	MA0041.1	chr19:6423289-6423301	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr19:6423293-6423305	AAACAAACAAAC	-	6.32
PLAG1	MA0163.1	chr19:6424170-6424184	GGGGGCTAAGGGGG	+	6.95
USF2	MA0526.2	chr19:6424333-6424349	CGCCCACGTGACCCCG	-	6.47
ZIC3	MA0697.1	chr19:6424303-6424318	GCGCAGCGGGAGGGC	-	6.25

Enhancer Sequence

GCCTGGGTGA TATTGAGACT GTTTCCAAAA AACAAACAAA CAAACAAAAA ACCAAGACTC 60
TATGGGACAC AAGTTACATC TCAGACACGT GAAGAGCAAC TTTAAAGAAA CCTCAACCCA 120
GCAAACTTAG GATCAGAGTC TGGGGTTTAG AAACCCAAAC CATGTTAAGA ATCTCCCTTT 180
CCACCAGTCT CCATTTTTCT ACGCTGCCCT AGAGCCAAAA CTCATGGGAT GCCCACAGGG 240
GGCCTGTCCC CACCAACTGA CAGCACCAGC TTCCTCCCTT CAAGCTGTCC CAGAATCAGA 300
CGGTTCCATG GGCAATAAGA CCAAATGCAC GCTAGAACCC ACCCAACTCC AAGGGTGAGA 360
GAGACGACAG AGGGCCAGAA CACAGGCGTT CACTTAACGG GACCTCCCAC CTTGGGAGGA 420
GCCAGTCTCT AGCCCCGGAG GCATTGGGAC AGCCCAGGAG CCGGTCGGCG GCAAAGTCCT 480
CCCATTCTAC CGACCCCCAC CCCTCCAGGC CATGGGGAGG CTGCAAATGG AGCTGGAGAG 540
GTCAGTCCTA GCAGCATGTG ACACTTCCTT GTCATTACGC CTCAATACAC GGGGGTGGGA 600
GACCCTCCCT TCTTTCCCCC AAAGAGACAG ACCACGCTTT CAAGCCACCA AAGCATCCAA 660
GAGCCAGTCC CCATGCTCGT CTTCCCCATT TCGCCCAAGT GCTCAGCCCT AGACAGGTCC 720
CCATCCACTT TCCCGACTGA AGAGGAAGGA CTGTCCCTCC CACCCCCACA ATGTCCCTTT 780
CTCCTAGAGA GGGGACAGAA ATGGGACTGG GTTGGGGGCA AACACTGCCC TTTGCCCTGA 840
TATGGAGGGG AGAGTAAAGG CCCTCCGCCC GGGAAGGTGG ACCCCTGCCT CCAGGCATGT 900
CCTAAGGCCG GGGGGCTAAG GGGGGGGTCC CAAAAGTGCG TCTCCGAGCT CCGGGGCGCC 960
TGCACACCCA GGCGCCGCTC CTGGTGACCC CCAGTGCGCC CCTACTCCCT GCAGGGGGGT 1020
CACCCGTTGG GATCCCACTC GAGGCGCAGC GGGAGGGCCA GGCCCCCGCC TACCGCCCAC 1080
GTGACCCCGC GACGGCCCCG GCCCCCCTCC GCGACCCTGC GCGCGCGCGC GCACGTGACC 1140
CCCGCCCCCT CCCCCGCCTG CGCGCGCGCG CGAGCGCGCC CCTCAGGCCC TCGGCCTCCT 1200