EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS133-03713

Organism

Homo sapiens

Tissue/cell

melanoma

Coordinate

chr1:226883090-226883760

Target genes

Number: 10
Name	Ensembl ID

H3F3A	ENSG00000163041
RP11	ENSG00000234478
ACBD3	ENSG00000182827
LIN9	ENSG00000183814
PARP1	ENSG00000143799
C1orf95	ENSG00000203685
ITPKB	ENSG00000143772
PSEN2	ENSG00000143801
ADCK3	ENSG00000163050
RP5	ENSG00000233706

dbSUPER

Number of super-enhancer constituents: 21
ID	Coordinate	Tissue/cell

SE_03869	chr1:226882978-226886945	Brain_Anterior_Caudate
SE_04801	chr1:226882860-226887506	Brain_Cingulate_Gyrus
SE_05781	chr1:226882582-226887714	Brain_Hippocampus_Middle
SE_06710	chr1:226882929-226887612	Brain_Hippocampus_Middle_150
SE_07746	chr1:226861943-226887535	Brain_Inferior_Temporal_Lobe
SE_10211	chr1:226883113-226887633	CD19_Primary
SE_10887	chr1:226873819-226893407	CD20
SE_11833	chr1:226883127-226884050	CD3
SE_17296	chr1:226856971-226887803	CD4p_CD25-_CD45RAp_Naive
SE_17765	chr1:226858457-226887760	CD4p_CD25-_CD45ROp_Memory
SE_18263	chr1:226857891-226887822	CD4p_CD25-_Il17-_PMAstim_Th
SE_20012	chr1:226883215-226887069	CD56
SE_22315	chr1:226882979-226887479	CD8_primiary
SE_25774	chr1:226883181-226887670	Duodenum_Smooth_Muscle
SE_26570	chr1:226883093-226883800	Esophagus
SE_54498	chr1:226882945-226887509	Stomach_Smooth_Muscle
SE_58303	chr1:226819953-226937809	Ly1
SE_59629	chr1:226819233-226928465	Ly4
SE_60416	chr1:226819368-226929640	DHL6
SE_61009	chr1:226812849-226900772	HBL1
SE_62233	chr1:226813614-226929647	Tonsil

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I226695

chr1

226883341

226887082

Enhancer Sequence

TTGTGCAAAG TGAGACTGGC ACTCATGGCA TTTTATGGCA GTTAATGTAT GGAAGGTTGG 60
CAAAGGGGGT TGGTTAACCT TCAGCCCAGA GACTGGCAGT CCTGCATGAC TCCACAGATG 120
CCAACATAAT CTTGGCTGCA CTGACAGGGC AAGCAGTCCA GGCATCTCTC ACACTCCCAC 180
CCAGGCCAGC TGCCCGAGCA TTGAACCCCG CCATCCTCTC TCTCTTCTCA CACCTGCCGC 240
AGACCTGACA CTACCTGTGG GGCCTCCCCC TCCCCTACAG AACGTGGCTC TGCTCCATCC 300
TCACTCTGTC CTCTGGCAGC CGCAGCAAGA GTCGGTGTGC AGCAGAATTG GAAGACAGAT 360
GGCAAGAGGG AAGAGAAGAA GGACAGGAGG GAGAGGACAC GGGGGAGAAG ACAAGAAGGG 420
AAGTGGAGAA ATTATGGCAG GGCCCACAAT GTCACTGTGA GCCCCCCAAA CCCAGGGGGC 480
AAGACAGTAA GATGAGGGAA GAGAGGGAAG CGGGGAGGAG GGGGAGGAAA CGGATGCAAG 540
GCCAGCAAAG GGAAGAGGAT AAGAAAAAGG CAGAGCAGAG GGAAAAGACT AATTACTCCC 600
AGCCCTCCAA TATTCACTTA CATGCTATGC TGCTTCTTCT TCCATTCAGT TCCTTCCTGC 660
TACTTGCCCG 670