EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS133-00725

Organism

Homo sapiens

Tissue/cell

melanoma

Coordinate

chr1:25416820-25418810

Target genes

Number: 22
Name	Ensembl ID

IL28RA	ENSG00000185436
NIPAL3	ENSG00000001461
C1orf201	ENSG00000001460
RCAN3	ENSG00000117602
SRRM1	ENSG00000133226
CLIC4	ENSG00000169504
SYF2	ENSG00000117614
RP3	ENSG00000261349
RHD	ENSG00000187010
SDHDP6	ENSG00000224183
RP11	ENSG00000259984
TMEM50A	ENSG00000183726
C1orf63	ENSG00000117616
SDHDP1	ENSG00000238084
TMEM57	ENSG00000204178
LDLRAP1	ENSG00000157978
MAN1C1	ENSG00000117643
RP1	ENSG00000228172
C1orf135	ENSG00000127423
PAQR7	ENSG00000182749
PAFAH2	ENSG00000158006
EXTL1	ENSG00000158008

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZEB1	MA0103.3	chr1:25418579-25418590	CCCACCTGCCC	+	6.14
ZNF263	MA0528.1	chr1:25416848-25416869	GGGGGCGGCGGGGGGGGGGGG	+	6.14
ZNF263	MA0528.1	chr1:25417393-25417414	GGTGGAGGAGGCAAAGGGGGA	+	6.79
ZNF263	MA0528.1	chr1:25417396-25417417	GGAGGAGGCAAAGGGGGATGA	+	6.8
ZNF740	MA0753.2	chr1:25416857-25416870	GGGGGGGGGGGGG	-	6.03

Enhancer Sequence

TCTCTGGTCG TCCGTAGCTC CGAAGGAAGG GGGCGGCGGG GGGGGGGGGG CTGTGCTAAT 60
TATCGGGGCG GTCGGGCGGA TGCAGCGCGC CCCACCGCCA TTTAGATGGG TGGGTTGAGG 120
GTTGGCGAGA TGGGGATGGT TTAAGCGAAA CCATGCTGAG TGGTTTAAGG CAGAGCGGAG 180
GAGCACAGAG GTTTTCTGAA GGCTTTAAGT CACATGTAAT CTTCGCATGG ACATTGGGGT 240
TTTGTTTTTT ATTGAAACAT TAATAATTCT GGTTTCTTGT AAAATATTCA TGGTTCCTGT 300
TGCTGCATTC AACCCCACTC TCGGCCGCTG CTTTTAATTT CCAACTCAGC CCGTGAAGGC 360
CTCTGCCGTC GACCACCCAT TGCTCCAGTG CAATTTATTA AGTGGAGGTA ACGGTGGCCA 420
TTGGGTGGTC AGAAAAATCG AGCTCAGGGT TTCTCTGAAG CAACTAGTCG CAAGCCAGAA 480
AGGCCCAGGA GCAGGCAAGG CTGCTGCTGG GCAGGCAGAT TGAGCACTTC AGGGCTGAGC 540
ACTTCAGGAC TGAGCTGGGG AAGGCAGAGG CAGGGTGGAG GAGGCAAAGG GGGATGACGA 600
GGGAGGAAAA AAGCTGCCCA GATGGTGGGA GAGCATCGTG ACAGCTCAGG GCAGGGAACA 660
GCAGAGCAGA GCCACAAAGA GCGCAGGCTC TGAGGAGAAA TGACCAGGCT CCACTCTACC 720
TCCAACTCGC TGTGTGACCT TGGCAAGTGG CTTCACCTCT CTGAGCCTCA GATTCTCCTC 780
TGGAAAACGG GCTCTGCTCG GCCGATGGCA GCCTCGACAG TTGCTGTCGT GTTGCATCAG 840
TGTTGTATGT TTGGAGAGAT CTTAAGAGAC CTAGAAGTTT AGCCCCTTCT TTGAACAGCT 900
GAGGAACAAA GCCCAGAGAG TGGAAGTGAC TCACTCATGG TCCTGCCTTT ATCACCTTGT 960
GAATAAGATT CCATGCCCTT TTCAACCTGA GCTCTGCAAT TCAGATTCTT TAAAACCAGT 1020
CAACATTCTG AGAACATTGC CTGAGTTCAT CCATGGAGCC CTGCCCAACC ACATCCCACG 1080
CCACCCCAAA AGAGCTATTA AAAGGCCTGG CTGCCATTGC AGCTGGGGTC CTGTCCCTCC 1140
CCCACCTCCC ATCAGGGTCC GTCCACCAGG GTGGATGCAG TTCCCTGGGG CCCTGGCTAC 1200
TGGTGCAGCG CAGCAGAGGC TTAATATTAA TAGAATCCCA GAATGTCAGC CCTGGAAGTG 1260
ACCTCAGCAG TCAGCTTCCT CTGCTCCATG GCTTTGTGGG TGAGGAAACT GAGGCCCAGA 1320
GGAGTTAAAT GATTTGCCAA ATATTGTGCA GACACAGACA GAACCACAGC CCCCAACCCC 1380
TTAACCTACG GATCTCTATG TTGACTCTGC CTGTGGTGTG GTGGGATGAG GAGAATTAGC 1440
CCCGAGACTT TCAGCAGGAG TGACCATAAG GCCACAGACG TCTGGGCTCC AGCCAGAGGT 1500
GGCCACCACT TGCATGTGTT TCCCAAGCCA GATCCAGCTC TCTGTGCATC TGTCTGTAAT 1560
CAGAAATCTG TCTATCCACA GCCAGGCATG CTCGGATTCA AATGGCCAGA TGGTCTGTGC 1620
ATAGATCCTA CAAGCCAAAC CCCTGTAGCC CCAGTCCAGG TGTCAACACA TTGAACTGAG 1680
GGGCCAGGAG GTACCAGTGT CCCCAGAGGA GTGGGAGTCC TTGTTGCCCC AGGAGACAGG 1740
TGGGGATGTG ACTCTCTGGC CCACCTGCCC CAGAGGCAGA AAGGTAGCCC ACAGAGCCAG 1800
CCACAAAGCC AGGAAAGGGG CACACAATCC CTGAAGCATG AGTTCCCCAA GTTCCCAGTT 1860
ATCCCTGGCA CTTACAGCTT TCCTCCCTTT GGTCCTAAAT TCAAATATAT CTTGTTATTA 1920
GTAATACAGA CAACTTAGGG AAAAAAGTAA AAACTACTCC AACTCCACCA GCAGAGATAA 1980
GCCCTAACCA 1990