EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-25378

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr3:56885770-56887100

Target genes

Number: 5
Name	Ensembl ID

CCDC66	ENSG00000180376
FAM208A	ENSG00000163946
ARHGEF3	ENSG00000240198
RP11	ENSG00000229863
APPL1	ENSG00000157500

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Gata1	MA0035.3	chr3:56886628-56886639	TCCTTATCTCT	+	6.02
MEF2A	MA0052.3	chr3:56886981-56886993	GCTAAAAATAGC	+	6.44
MEF2B	MA0660.1	chr3:56886981-56886993	GCTAAAAATAGC	+	6.92
MEF2C	MA0497.1	chr3:56886979-56886994	GGGCTAAAAATAGCC	+	6.66

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH03I056851

chr3

56885057

56887390

Enhancer Sequence

AAGAAAAATT AGAAGATACA GACAAAGCAA AAAGAAGAAA AAATTAAGTT ACTCAGGGCA 60
TTCACAATGT TGCCCAGGCT GGTCTTGAAC TCCCAGGCTC AAGTGATCCA CCCACCTCAG 120
CCTCCCAAAG GGCTGCAATT ACAGGTACGA GTTACCATGC CTGGTCTTAC GAACTTTACT 180
TTTAACAAAG ATTCAGTATT AATGTTATGC TAATGGGTCA TATCATGTCT GGGTAAGAAA 240
ATGTCAGTGG TTACAGGTGG CATCCAGCCT TGTGGATTTG GCCCTTGGAG CCTCTGTTAT 300
CTGACCCTTA CCCTGGAAGG GGTGGTCACC CCTGAGGACC TGTGAGTCTT CCTCATACAT 360
GACTCACTGT GCTTCCACCT TAGTATTTCC CAAACCTGGA CCTTCCCTTG GGCAGGGAAA 420
GCCTACTAGA CAGCAGAGCT ATGGGTCATT CCGGAAAAAA TTCCCTAGTG TAGAAGTGAG 480
AATCTTCCTC CTGAGCACCC TCTGTGATGA AGTCTCCAGG GCCCCATGGT GCCCTGCATG 540
TTCGAACGTA TTTTCATTTT CCTTCGTTTT CTTGATTTCT TAGATGATTT CATCTCACAG 600
GAGGCAGAAT CTGAGTAAGT GTTCTTTTGT AGTTTCTTTG AATTGAATCA GAGCCCAGAG 660
ATGTCAGAGA CCAGATAAAA GGGGACTGCT GGACCTACCA CACTGACCCT ATTGCAGTAC 720
CAGTCCCCAG AAGGTACAGC CTGACACACT TACACACACA TGCGTGTACA CGTGCACACA 780
CACATCCAAA GACCAAAACT GCTGTTTTTT CAAATTCTCT AATGCGTCAG CAGAAAGCTA 840
CAGAGCTATG ATCCTTTCTC CTTATCTCTA CAGACCAAAA TCATAGCTAG TTCTCTTTTG 900
TTTCATGGGA TTAAAGAAAA AAAAAACCTA CCGAATTGTC ACAAGTTGAT TCACATGCTG 960
TAAAAAAACC CAATTGTATA ATATGCCATT CTTAATGGTC AACTTGGAGA AGAAAATGTG 1020
AAATATGCAG CTGATAATCT TTTCAGTTTC GGGCTGGGCT GGCTGATTCA TCAAACCCTG 1080
ATCTGACATG TCCCCTCTAT CCTCTCAACC ATTTCCTTGA CTCACTAGAA TTATTCCTTC 1140
CAAAAAGGAA CCTTGTCTGC TCGATGGATG TATAGACCAT GCATTGCATT TTAGAAACAG 1200
TAAAAGTAAG GGCTAAAAAT AGCCAGAAAG TGCTTTAGTC AAGAATCTCT AGTTGAAATT 1260
CAGGGGCATT TGTGTTCAAG AAAACAAGAC CTCCCAAGAA CAGCAGATTT TTAAACTTTG 1320
AATTTGATCC 1330