EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-25250

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr3:49202210-49203690

Target genes

Number: 38
Name	Ensembl ID

CCDC72	ENSG00000232112
SHISA5	ENSG00000164054
UQCRC1	ENSG00000010256
CELSR3	ENSG00000008300
IP6K2	ENSG00000068745
PRKAR2A	ENSG00000224424
SLC25A20	ENSG00000178537
ARIH2	ENSG00000177479
C3orf71	ENSG00000221883
RP13	ENSG00000235236
P4HTM	ENSG00000178467
WDR6	ENSG00000178252
NDUFAF3	ENSG00000178057
DALRD3	ENSG00000178149
IMPDH2	ENSG00000178035
AC135506.1	ENSG00000241461
QRICH1	ENSG00000198218
QARS	ENSG00000172053
USP19	ENSG00000172046
LAMB2	ENSG00000172037
CCDC71	ENSG00000177352
KLHDC8B	ENSG00000185909
CCDC36	ENSG00000173421
RP11	ENSG00000225399
GPX1	ENSG00000233276
RHOA	ENSG00000235908
TCTA	ENSG00000145022
AMT	ENSG00000145020
NICN1	ENSG00000235261
DAG1	ENSG00000173402
BSN	ENSG00000226913
APEH	ENSG00000164062
RNF123	ENSG00000164068
MST1	ENSG00000173531
GMPPB	ENSG00000173540
IP6K1	ENSG00000176095
UBA7	ENSG00000182179
MST1R	ENSG00000164078

SNPs

Number: 1
ID	Chromosome	Position	Genome Version

rs4499638

chr3

49202782

hg19

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

PBX1	MA0070.1	chr3:49202809-49202821	ACATCAATCATA	+	6.11
RREB1	MA0073.1	chr3:49203561-49203581	GGGTGGGGGTGGGGTGGGGG	-	6.74
RREB1	MA0073.1	chr3:49203560-49203580	GGGGTGGGGGTGGGGTGGGG	-	8.54

Enhancer Sequence

ATGGAACAAA AAGGGGAATA GCTAATGCAA TGGCTCCAAA GTGAGAAAGG GTTAAGGCAT 60
ACTTGGTGTG GGATCTGGGA TCTAGGTGAA AAAACAGGCG AGGATAGAGC AACAAAGAAC 120
CCTGAATGTT AGCCAAAGGG CCCAGACTTA CACCCACTGT CCATGCCCAT CTGTTTCTCC 180
AGCTGCTGCT GTTCATGTGT GGAGCTGGAG TGGGGTGGGG GAATCTCCCT GCCCACCAGA 240
AGTTCTGTTT TCAGTCTCTA GACAGGGTAC TCAGCAACCC ATTTTCTAGC TCCAGAGGCA 300
TGGAGACCTA ATCAAGAGTC GGACTTTTCT TCAACAGAAA CTAAAAAGCT GATGAGTAGC 360
AGGTGCCAAT GACATCTCTC TAGGCAACCA GGCAGACCAG GGACCAGGAA GCCAGACCAA 420
GATCCCAAAG TTTAAGGACA ATGGGAGCCA AAGGCTGCAA GTAGGATGGT GAGTCAAGGG 480
GACATTAGCG GTATGCACTG TCCTACCTAA GACTTGGAGG GCCACAGACC TCAGTACAGC 540
CCAGATGGAG GTGACTGAGA ACACCTAACT ACTCCCAGAC TTCTTTAAAG AAGCTGTGGA 600
CATCAATCAT AACTAACATC TAATACCCAA CCCAACACTG AGGGTTCCCA GAAGCAAGAG 660
GCAGCTCCCC AGCTGCACCA GAGCATTAAA AGATCAGCCA GGATCAGGCA GGTCCCTCGG 720
GCCATGAGGC CCGTCTGTGT AGTTTCTTCC CACCGCTCTA ATGCAGCAGA TGAAGTCTTC 780
AGAATACCCT GGAGGAAATG CCCTAGGGCT CTTTGTTTGG AAACATTCTT GGATCCTCAG 840
GTGTCTTGGG CACTTCCCCT CCCCAGAGAC CGTTCTCCAA GCACAATCCT TGCACATGAC 900
TTTAGTTCTT TATTAATGTT TTTTGAAGGG ATGTAGTTCC CAGAGCTGTG AACTGTAGAA 960
GAGAGAGGGA CCTATTTCCC ACCCTCACAC GCGCCCCAGC GCAAATATTT GGGGTGACCT 1020
GGGGGCTCTT CCACCCAGGT TAGGCTGGGC TCTTGGGAGG GGTTTTCTGG GCTTTCGAGA 1080
AGCTTCGGAA ACAGAGGCTC CTGCCCGGCC TCCGACTTCC CTTCACACGT GCCCCCGGGG 1140
AAGGCAGGAG AAGTTGACGG AAGATAGGGC GTGAGAGAGG CGCCACACAG GCAGACCGGG 1200
GGAGGGGGCA GATCGGGGCC CTCAGGCTGG GAATGCACGT CCTTAGGGCC CAAGCCGTGA 1260
GGCGGGGGTC ACTGAGGCAG CGAAATGTAC AGGGTGAACG GTGCTAGCCC TACCGGGACC 1320
GCACAGCCCC AGGGTGGGGT CGCTGGGCGC GGGGTGGGGG TGGGGTGGGG GGTCTCGGCC 1380
AGGCCGGCGG AGGACGCGGG TCCGGGAAGA GTTGGCCGCT TGCCCGTCCG CCCTGCCGCC 1440
TCGCGGGCCG CCCCTCCGCG GCGCGGCTAG GCCCGCGGCT 1480