EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-22910

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr20:49536000-49537160

Target genes

Number: 17
Name	Ensembl ID

KRT18P4	ENSG00000229222
SNAI1	ENSG00000124216
AL034429.1	ENSG00000244376
PTPN1	ENSG00000196396
AL133230.1	ENSG00000239742
RP4	ENSG00000232043
RPL36P2	ENSG00000231302
FAM65C	ENSG00000042062
PARD6B	ENSG00000124171
BCAS4	ENSG00000124243
TMSB4XP6	ENSG00000230043
PSMD10P1	ENSG00000228663
RP5	ENSG00000259456
ADNP	ENSG00000101126
DPM1	ENSG00000000419
MOCS3	ENSG00000124217
KCNG1	ENSG00000026559

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Crx	MA0467.1	chr20:49536518-49536529	AAGAGGATTAA	+	6.14
IRF1	MA0050.2	chr20:49536810-49536831	AAAAAAAAAAAGAAAGAAAGA	-	6.25
Myod1	MA0499.1	chr20:49536210-49536223	GGCAACAGCTGCT	-	6.34
Tcf12	MA0521.1	chr20:49536213-49536224	AACAGCTGCTG	+	6.32

GeneHancer

Number: 2
ID	Chromosome	Start	End

GH20I050919	chr20	49535916	49536689
GH20I050920	chr20	49536846	49538960

Enhancer Sequence

TTTCCCTGCT GTATCTCTAT CATCTATGTC AATGACTAGA ACAAAGCAGG CACTCAATAA 60
ATTCAGACAG AATGAATGAA TCTCTGCCTA GAAAAGGCTT ACAGATATGA CATCCAATAA 120
ATATTTGCAG TAAAAGAGGC GATGTATCAG ATGTGTCACA AACTAAATCC TAGGAGGCTT 180
CATGTTTAGT TCATTCTCAG CAGGGAGGGT GGCAACAGCT GCTGAGTTGG GGCCATTAAC 240
TTAGGTGAAG AATCTGCATT TACTGCAAAA GACTTCTGGC GCAGTTCCAG AGGCCGGAAA 300
GCAAGGTGTT CTAGGAACTT CTTGCTCAAC TCCACTGAGT CAGAATGGTT GCTATGTCAA 360
GCTTCTGAGT AACAAGGAAC GACATGATTG GAAAGGCAGG GTGAGGATAG GATGGGGATC 420
TTGAATGTGA AGCTGGAGTC TGCTGCCATG TCTGGTAGGC ACCGAGGAGA TGCTGCAGGT 480
AACGAAGTAC AGAAGGGACA TGATTCTAAT GGCACTTTAA GAGGATTAAT CCAGGCCGGG 540
TGTGGTGGCT CATGCCTGAA ATCCCAGCAC TTTGGGAGGC CAAGATGGGC AGATCACGAA 600
GTCAGGAGCT CGAGACCAGC CTGGCGAATA TGGTGAAACC CCATCTCTAC TAAAAATACA 660
AAAATTAGCC GGGCGTGGTG GTGTGCGCCT GTAATCCCAG CTACTCAGGA CGCTGAGGCA 720
GAAAAATTGC TTGAATCCGG GAGGCGGAGG TTGCAGTCAC TGCACTCCAG CCTGGGCAAC 780
AGAGCGAGAT TCCACCTCCA AAAAAAAAAA AAAAAAAAAA AGAAAGAAAG AAAGAAAAAG 840
AAAGCAGTGG CTCATGCCTG CAATCCCAGC ACTTTGGGAG GCCAAGGCAG ACAGATCACT 900
TGAGGTCAGG AGTTTGAGAC AAGCCTGACC AACATGGTGA AACCCATCTC TACTAAAAAT 960
ACAAACATGA GCTCGGTGTG GTGGCCAGCG CCTGTAATCC CAGCTACTCG GGAGGCTGAG 1020
GCAGGAGAAT TTCTTGCGCC CAGGAGGCAG AGGTTGAGAT CGCGCCACTG CACTCCAGCC 1080
TGGACTCCAT TAAAAAAAAA AAAAAAGCCT GGAGGAAGTC AATTAAGTAA AAGAGTAGAT 1140
ACCAGACCTA CCCAACCCTC 1160