| Tag | Content |
|---|
EnhancerAtlas ID | HS129-22204 |
Organism | Homo sapiens |
Tissue/cell | MCF10A |
Coordinate | chr20:25281520-25282850 |
Target genes | | Number: 13 | Name | Ensembl ID |
|
SNPs | | Number: 1 | ID | Chromosome | Position | Genome Version |
|
TF binding sites/motifs | | TF | JASPAR ID | Coordinate | Motif Sequence | Strand | -Log10(p-value) |
| NFIA | MA0670.1 | chr20:25281702-25281712 | GGTGCCAAGT | + | 6.02 | | RORA(var.2) | MA0072.1 | chr20:25282035-25282049 | TTGACCTACTTTTT | - | 7.34 |
|
| | Number of super-enhancer constituents: 6 | ID | Coordinate | Tissue/cell |
| SE_05612 | chr20:25281651-25283441 | Brain_Cingulate_Gyrus | | SE_06351 | chr20:25280828-25284061 | Brain_Hippocampus_Middle | | SE_08303 | chr20:25281603-25284410 | Brain_Inferior_Temporal_Lobe | | SE_43731 | chr20:25273874-25282410 | MM1S | | SE_46586 | chr20:25279934-25282273 | Osteoblasts | | SE_67254 | chr20:25273874-25282410 | MM1S |
|
| | Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder | | Number of disease enhancers: 3 | Chromosome | Start | End |
| chr20 | 25282192 | 25282493 | | chr20 | 25281748 | 25282141 | | chr20 | 25282507 | 25282709 |
|
| | Number: 2 | ID | Chromosome | Start | End |
| GH20I025300 | chr20 | 25281441 | 25281610 | | GH20I025301 | chr20 | 25281652 | 25283441 |
|
Enhancer Sequence | CTAGACCACA GGACAATCAG GAGCCAATCA TTTGAGCTCA GACCAAAGAT CCTTCTCCAC 60
AGTCCTCACA CTGCTATCTA AGGAAGCAGA GGCTGTGCAG AGAGGAGGCA GCCAAGAGCC 120
CCATGAGGAT GCGCTGTAGC CCAGAGCAGC ACTCAGTGAG TTAGGCAGGG AACAAGCAGT 180
GTGGTGCCAA GTCAAAGCCC AACACACAGG CATGGAGACA AGGTCTCTGA TTCTTGACCC 240
TCAACTTCAG AGCTATTCTC TGGTCTAAAT TTTCTACACA TATCTTCCTT TTATAATGGG 300
GAAAATTATA ACCGCAAAGC AAACCCATAC TCTGAGCCCA CTGCCCCCTT AGCAACCCAG 360
GTACCTGTGC TAAAGGGACA CAGTTTTGCC TCTGGAACTT CCAAAGGCAA CTGGAGAAAA 420
GCAGAAGTTT GCAGTAGAAT TACTCACGGG ATATACAGCA CTGGGAGGCA ATTCAGGCCA 480
CCAATTTCAG TCCCCTGCAG GGAGAAACTG GCACCTTGAC CTACTTTTTG GAGCTGACTG 540
GCACAACACA ACAAAAAACT CTATCACCAT TAGCAGCAGC CCCTCCGTGG GTCCAGTGCT 600
TAGGGTCGAA GTACCACATG CCCTCCTCGG CTCAGAAGCC TTGTCCCATG CACAGGGAGG 660
GTTAGCATCT TGCCCAAGGC CACACAGCCA GGCAGTGGGG TGGGGGCCTG TGTCCTCTGA 720
CAGGCAGGTA GGCGAGTCTG GGCAGCAACC TGCATAGGGC CCAGGGCAGT ACAGAGGAGG 780
CCGGGGGTTG GTCCATTCCA CACACTGCCC TTGTCACTAC TGCCAAGGCC TCACCCTCAG 840
GCTTGGGCTC TGCACTCAGG CCCAGGTGGG TACTCATGGC TCTCTGGGCT GGCGCCCATG 900
TCCTGCCAGT GCAGGGCAGT CAGGAGCACC ACGTCCCTTC AAGAAGCAGC TGGGGACAAA 960
GAGGCTTTTG AGGAGCTGTG TACGTCTTGA GAGGTGTGTG GAAGAGATCC GAGGCCTGCA 1020
AGTGGCTGGG GTGTCTGTGT CTGAGTGTTC CCAAACATGG CCACCTGTGA GCGTGTGTGC 1080
CCCCCCGTGT GGGTCTGTAC ATCCTTTACA ACATGGAGGC GGCTCACCCT GCATGATCAT 1140
GTGAACAGTC CTGGAGCAGG AGAGAGGCAC TCCCTCAAAC CCCTCTGCCA AGGAAATGGA 1200
AGGCTCCCAA ATCACTGTGA CTCTTGGCCC CACTGAGGCC CCCTGAGCAG CTTCAGCAGC 1260
TGCCACCTGC TGCACGTTAG GTGTGAGCCA GTGCTGCCCA GACGAAGCCC CTGGGTGGGA 1320
AGAGAATGTC 1330
|
