EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-03753

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:228578910-228581020

Target genes

Number: 23
Name	Ensembl ID

CTD	ENSG00000242757
ZNF678	ENSG00000181450
SNAP47	ENSG00000143740
JMJD4	ENSG00000081692
WNT9A	ENSG00000143816
ARF1	ENSG00000143761
C1orf35	ENSG00000143793
MRPL55	ENSG00000162910
RP5	ENSG00000224566
GUK1	ENSG00000143774
GJC2	ENSG00000198835
IBA57	ENSG00000181873
TRIM11	ENSG00000154370
RP11	ENSG00000231563
TRIM17	ENSG00000162931
HIST3H2A	ENSG00000181218
HIST3H2BB	ENSG00000196890
RNF187	ENSG00000168159
RN5S6	ENSG00000200624
RN5S16	ENSG00000202257
RN5S18	ENSG00000212237
FTH1P2	ENSG00000234975
RHOU	ENSG00000116574

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr1:228580908-228580920	AAACAAACAAAC	-	6.32
JUN(var.2)	MA0489.1	chr1:228580020-228580034	GAAAGATGAGTCAT	+	6.27

GeneHancer

Number: 2
ID	Chromosome	Start	End

GH01I228392	chr1	228580012	228580493
GH01I228393	chr1	228580601	228582473

Enhancer Sequence

TTGAAATAGC TGAATTTTAC TGCGTGAAAA CTATACCACA ATTAAGTTGT TACAAAAAGT 60
CAGGGTGGTC GGGAGAGGTG ACTCCGGGCT GGGGAGGGCA GGGTAGGGCA GGGAAAGCAC 120
AGGGATCCGG GGCACGGCGG GGACAAAGCT CCACACCAGC ACCAGGAGGC CTTCCTCCAG 180
ATGGCAGGGT TGCCCAAGCG AACACAGGGC ACCTGGGAAG GGACAGGACA TGGGAGGCGT 240
GGAAGCAAAC AGGGTGTGCG GGGCTTCTCT GGGTGCCTGG AGTGCACGGG GCTGGGTGTG 300
GGGTGACCAG AGGCTCCGGG CACTGCTAAC ATGGGAGGCA ATGGGCTCCG TGGCCACCCA 360
GGGCATAAGG GGATCTAGGG TGCGTGGGTG ACCCATGGGC CCTGGGGGGT CTGCTCACTG 420
GGAGGCTGCA GGTGTGGGAG GATGGCATTG GGCACACAGG GGGCATGTGG TGGGCAAGGG 480
TGAGATGGGG AGGGTGCAGC ATGCAAGATG GGCACTGGGG TGCAGGGGGC TCAAGGGCGC 540
AGGGGGGCAC CAGGACGGTT GGGTGCTGCA CAGGTGGTGC TGGGCACCCT GCATGCAGCC 600
CACGGCATGA CAATGTCCCG CAGCTCTTGG GACATCATGG GCACTCTGAG GGTGGCCAGC 660
TACTGTCAGG TGGGCACAGC AGGTGTGGAG GAGAACATGC AATGGGAGCC TGCACAACAA 720
CCCTGTCTTT GGACCATGCT TGACGGTGCA TTGGTGATGT ACTGTGCAGA CCTCCAGACC 780
TGGTCCCATT GCAGAGGGCC TAATCTCATT CATGAGGGCA CCACTTTCAT GAACTAATTA 840
CATCCCCAAA GCCCCATCTC CTCATAACAT GAACTTGCGG TGAGGATTTC AACATATGAA 900
TTTGGGGGAA CCTAAATATT TGGTCAACTG CAAGCTGCAC ACAGTGGGGC TCCCTGACAG 960
TGCAGGACAC AGTTGTTCAG GCCGTTCACT GTCACCTCCT CTGAGAGACT GGCTCCCTGC 1020
TCAGGGTCCT GCATGTTCCC ATCATCTTTC CACTGCCTGG AAGCATGGGT GACACCCACA 1080
GGGCCTCAGC ACTCAGCAGG GGGACATCCG GAAAGATGAG TCATGAAGTC TGCCCTTCTC 1140
TTATGGAGTG TGCAGCTTTA TTTTAAAGCT ATGGCCAGAA CTATCCTGGG TGCACACCCG 1200
TGGTCTCACC CACAAGGCTG CCCCCGGCTG TTACCACCAG CCAGATGGGC TCTCCGCTCT 1260
TTGCTCAGGT GTATGGTCCT TATGTGGAGC TGCTGAAGGA ATTGTTTTTT GAGATAACCT 1320
GGTAAATGTT TCGTGTTCCA CTGTGCTTCA TTACAGTCTC CTGAGTATCA TTTATTTAGT 1380
CATTCTCCCA TTCTTGTCTT TTTTTTTGGT AGGGGGATAG GTGGCATTAC CTAATACCAT 1440
GTTGAACAAG ATCAGCAATT CTGAGGTGGC GGGGGCTGCC TCACTCCAGG AGGCACAAAC 1500
GCAGCAGACG GAGTCTTCAA TTGGAGGGAA GCCCTGGACA CAGCCGCTTG GAAACAGGCT 1560
ATGGCAATAC TCACCGCACC AGGCCTGGTG GCTCAGCCTG AAATCCCAGC ACTTTGGAGG 1620
CCAAGATGGG TAGATCGCTT GAGCCCAGGA GTTTGAGACC AGCCTGGCCA ATAGTGAGAT 1680
TCCCACCTCT CCAAAAAAAA AAAAAATTAG TTGGGTATGG TGGTGTGCGC CTGTAGTCCC 1740
TCCCAGCTAC TTGGGAGGCT GAGGCAGGAG GATCTCTTGA GCCCAGGAGT TCAATACCAG 1800
CTTGTATAAC ATGGCAAAAC CCCATCTTTA CAAAAATTAG CTGGGCATGG CCCCATCTGT 1860
AGCGTGCACC TGTAGTCCCA GCTACCCGAA AGGCTGAGGT GTGAGGATCA GCTGAGCCTG 1920
GGAAGTCGAG GCTGCAGTGA GTGAGCCGTG ATTGCACCAC TGCACTCCAG CATGGGTGAC 1980
CCTGTCTCAA AAAACAACAA ACAAACAAAC AAAAACCCCA CCCCAACACA GAGAAATGCC 2040
CAGTCCCCTG GTTTCCACTC AGACTTCTCT TTGTTGCAGC TGAATGAAAC TGCTGATCTT 2100
GTTCAACATG 2110