EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-02881

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:201530860-201532180

Target genes

Number: 19
Name	Ensembl ID

RP5	ENSG00000232237
TMEM9	ENSG00000116857
IGFN1	ENSG00000163395
PKP1	ENSG00000081277
TNNT2	ENSG00000118194
LAD1	ENSG00000159166
TNNI1	ENSG00000159173
RP11	ENSG00000224818
PHLDA3	ENSG00000174307
RPS10P7	ENSG00000223396
IPO9	ENSG00000198700
SHISA4	ENSG00000198892
LMOD1	ENSG00000163431
TIMM17A	ENSG00000134375
RNPEP	ENSG00000176393
ELF3	ENSG00000163435
GPR37L1	ENSG00000170075
ARL8A	ENSG00000143862
PPP1R12B	ENSG00000077157

dbSUPER

Number of super-enhancer constituents: 16
ID	Coordinate	Tissue/cell

SE_02662	chr1:201530490-201533031	Astrocytes
SE_03518	chr1:201531365-201532292	Brain_Angular_Gyrus
SE_05175	chr1:201531173-201533364	Brain_Cingulate_Gyrus
SE_06157	chr1:201531124-201543283	Brain_Hippocampus_Middle
SE_07280	chr1:201531373-201532479	Brain_Hippocampus_Middle_150
SE_08097	chr1:201531243-201532862	Brain_Inferior_Temporal_Lobe
SE_37083	chr1:201528174-201537720	HSMMtube
SE_44518	chr1:201527933-201533209	NHDF-Ad
SE_45347	chr1:201529934-201533172	NHLF
SE_45633	chr1:201527920-201535652	Osteoblasts
SE_52112	chr1:201528377-201533160	Skeletal_Muscle_Myoblast
SE_56031	chr1:201528553-201532965	u87
SE_63919	chr1:201528508-201533164	HSMM
SE_65852	chr1:201531402-201532104	Pancreatic_islets
SE_67744	chr1:201528553-201532965	u87
SE_67991	chr1:201468991-201535915	TC32

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I201559

chr1

201528377

201533452

Enhancer Sequence

ACAAGGCTGT GTTTGGCTGT GTTCCCTACT CAGCCTGGGG CCTCCATGAG ATTAGGAACT 60
GTGCCTTGCC CATCAGCCTG GGAACTCCCT GCAGGCTGGG GCTCTGTTCC TCCATCAGAT 120
CCCCCATGTT CAGGGCCCTT AGGCAGTAAG CTTGGTCACA GCATGAGACT ATCAATGGTT 180
GGAACAAAGG CACCCAGTTA GGTTTAGGTT TGAGAATCAA CCAAGGAGAC CAAGGAGGTT 240
CTGAAGGTAT TTTTTATTTA TTTATTCCTA TTTATTTTTC GGTTTTTTTA GAGACAAGGT 300
CTTGCTCTGT CACCCAGGCT GGAGTGCAGC GGCACCATCA TAGCTCACTG CAGCCTTGAA 360
CTCCTGGGCT CAGGCGGTTC TCCCACCTTA GCCTCCTAAG TAGCTGAGAC TACAGGCACA 420
CACCACCTTG CCTGGCTAAT TTTTTTTTTT TTTTTTGTAG AGACAGCTGG GTTGGGAAGT 480
CTCACTATGT TGCCTAGGCT GGTCTCGAAC TCCTGGGCTC AAGTGATCCT CTGGCCTTTC 540
AGCCCCAAAA GTGCTGGAAT TACAGGCATG AGCCACCAAA CCCAACCTGA AGGTATTTTT 600
CTAAGGTCAA GTATGCCCCC CGACCTTGGG TCCTAGTTGG TAGAAAGCAT TTCCGAAGTG 660
GAGACATCTG GATGGCAGAT GTGAAGTTGG CTGGGATGGG CGAAGGTCTG GAAGGCTTCA 720
GATTCCAGGC CCCATGACTC ACTCCTCCAT CACAGCAACC CCTCAGCAGC TGGGCCTCCT 780
GAGCCCTGGG CAGGACAGGG TTAGTGGGCC AGGCCCAGGT GGGCAGTGGT CCTTTGCCTT 840
GGACACTGTA TGGTCTGAAA GGATCCCGGC AGGACTGATC ACTTTTGAAA CTGCTTTCTG 900
AAAGCTCCAA GCTTCCTTCT GAGTGGAGCT TAAGATATAA TATTAAGCAG GTCATTCTAG 960
GACTGTATGA GAGCAGAATG TGGCATCTCT TTCTGTTTTA GCTTGCAGGG TACTTCTAGG 1020
CGGTTGGTGC TCTCTCCTGG GCCTGGTGGA TGGAAGGGAG CAGGCAGGGA GGGGTGGGGC 1080
AGGCCCTGCC TACAGAGCCT GTCAGTAGGG AACCAGTGAG TCACCAGAAG TCCAATACCT 1140
CAGTCCAGAT CCTGGATGCT GTTGGATCAC GGGATCTGTC TGAGCATCAG TTTCCTTTTC 1200
TGAAAAGTAG GGATGATAAC AGCCTAGGAC GGTGGGTGAA TCAGTGAGGT AATGCACAGG 1260
AACACGCATA GTAAATAGTT TTTGCCAGAG TGGGTGGTTA TGAGTATTTA GAGTGGCCTG 1320