EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-02368

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:160985750-160986800

Target genes

Number: 25
Name	Ensembl ID

RP11	ENSG00000213080
TSTD1	ENSG00000215845
F11R	ENSG00000158769
USF1	ENSG00000158773
ARHGAP30	ENSG00000186517
PVRL4	ENSG00000143217
KLHDC9	ENSG00000162755
NIT1	ENSG00000158793
PFDN2	ENSG00000143256
DEDD	ENSG00000158796
ACA64	ENSG00000238934
UFC1	ENSG00000143222
USP21	ENSG00000143258
PPOX	ENSG00000143224
B4GALT3	ENSG00000158850
NDUFS2	ENSG00000158864
ADAMTS4	ENSG00000158859
FCER1G	ENSG00000158869
TOMM40L	ENSG00000158882
NR1I3	ENSG00000143257
PCP4L1	ENSG00000248485
MPZ	ENSG00000158887
SDHC	ENSG00000143252
C1orf192	ENSG00000188931
RRM2P2	ENSG00000236484

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

MEF2A	MA0052.3	chr1:160986099-160986111	ACTAAAAATAGA	+	6.27
MEF2B	MA0660.1	chr1:160986099-160986111	ACTAAAAATAGA	+	6.32
MEF2C	MA0497.1	chr1:160986097-160986112	CAACTAAAAATAGAA	+	6.56

dbSUPER

Number of super-enhancer constituents: 5
ID	Coordinate	Tissue/cell

SE_27354	chr1:160985660-160986081	Esophagus
SE_27354	chr1:160986159-160986728	Esophagus
SE_27895	chr1:160981377-160986786	Fetal_Intestine
SE_28868	chr1:160981188-160986807	Fetal_Intestine_Large
SE_64515	chr1:160986307-160986796	NHEK

Enhancer Sequence

GCTCTATCTT GAATCGGAAC TGGGCTGGAG ACTCCACAAG ACATGATCAC AAAGGAACTG 60
AAGAGCAACA TGGTGAGGTA AAAGTGGTCT GGAGTGGCCA GGTGCAGGGG TTCACGCCTG 120
TAATCCCAGC ACTTTGGAAA GCCTAGGCAA GAGGATTACT TGAAGTCAGG AGTTCGAGAC 180
CAGCCTGGCC AACATGGTGA AAACCCGTCT CTACTAAAAA TACAAAAAAT TAGGGGCCGG 240
GCGCGGTGGC TCACGCCTGT AATCCCAGCA CTTTTGGAGG CCGTGGCGGG CAGATCATGA 300
GGTCAGGAGA TCAAGACCAT CCTGGCTAAC ACAGTGAAAC CTCGTCTCAA CTAAAAATAG 360
AAAAAATTAG CCAGGCATGG TGGCGGGCGC CTGTAGTCCC AGCTACTCAG GAGGCTGAGG 420
CAGGAGAATG GCATGAACCC GGGAGGTGGA GTTTGCAGTG AGCCGAGATC GTGCCACTGT 480
ACTCCAGCCT GGCGACAGAG AGAGACTCTG TCTCAAAAAC AAATAAATAA ATAAATAATA 540
CAAAAAATTA GCCGGGCGTG GTGGCGCGTG CCTGTAGTCC CAGCTGCTGG GGAGGCTAAG 600
GCAGGAGAAT CGCTTGAAGC CGGGAGGTGG AGGTTGCAGT GAGCCAAGAT CATGCTACTG 660
CATTCCAGCC TGGGTAACAG AATGAGACTC CGTCTCAAAA AAAAAAAAAG TGATCTGGAG 720
CCAGAAGGCA AAGACTAAAG GACACTGAAA TTCCACTGCC ACTCGTTTCC TAGTTCCAGG 780
TAGAACTAGG AAGTGCCAGT CACCAGTTTC TAGTTTGGAG GGAACAATTC ACTCCTGGGA 840
GTAGAGGGAG AGGAAAGGAG GAGTGACTCA CCAGTGTGGG GAAAAGCAAG AGAGATCAGA 900
TTGTTACTGT GTCTGTGTAG AAAGAAGTAG ACATAGGAGA CTCCATTTTG TTCTGTACTA 960
AGAAAAATTC TTCTGCCTTG GGATGCTGTT AATCTATGGC CTTACCCCCA ACCCCTTGCT 1020
CTCTGAAACA TGTGCTGTGT CAAACTCAGG 1050