EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-02035

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:149512650-149514080

Target genes

Number: 19
Name	Ensembl ID

RP11	ENSG00000226067
U1	ENSG00000252105
HIST2H2BF	ENSG00000203814
HIST2H3D	ENSG00000183598
HIST2H4A	ENSG00000183941
HIST2H3C	ENSG00000203811
HIST2H2AA3	ENSG00000183558
HIST2H2BC	ENSG00000220323
HIST2H2BD	ENSG00000203819
HIST2H2AA4	ENSG00000203812
HIST2H3A	ENSG00000203852
HIST2H4B	ENSG00000182217
HIST2H2BE	ENSG00000184678
BOLA1	ENSG00000178096
HIST2H2AC	ENSG00000184260
HIST2H2AB	ENSG00000184270
SV2A	ENSG00000159164
SF3B4	ENSG00000143368
MTMR11	ENSG00000014914

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1	MA0050.2	chr1:149513545-149513566	AAAAAGAAAAAGAAAGGAAAG	-	6.8
IRF1	MA0050.2	chr1:149513556-149513577	GAAAGGAAAGAGAAAGAAAAG	-	7.18
NKX2-5	MA0063.2	chr1:149513488-149513498	ACCACTTGAG	+	6.02

Enhancer Sequence

TTTTGGAGAT TGAGGATGGT GAGGTCTCAG TGCTTGGCCC CCTTCTAACT CTGGGTACCT 60
CCCCTCCCGT GGTCAAACTG GTCCAGTGCA CAGGCCCCAG CTCCGACGAC CATCTCCCCC 120
CTACCCTTTG CTCCCAGCAA AGGCCATTTC TAGGTCAGTC GTGAGGTACA GCCAGGACAG 180
GGCAGCTCGC TCCGAGATTT TTGGCTCTCG AAGGCCTTGA GCGCTGTGGT TCTGCAGAAC 240
GCTGTCTGCC TCTTGTGGAG GAACTGACAC CCGCTGGAGA AAGTGTGGAG GGAAGCGAGG 300
GCTGCACCTG CACGCAGGAT CTGAGGCAAG CGGCTGTTCC CAGCTCTCAG TGCAAAAGAC 360
ATTTGTCATC TGAGAGGCTG GACTCAGTTA TTATAATTTT CAATTTTGTC AATAAAAACC 420
GAATGGAAAT TTGTTTTCTT ACTTGTAGAA ACCTCCTCAC AAGACCTCCC ATCTTACATT 480
CCAGGGAGAA TTAGCAGGGT ATTCCGCCAA GACATAGGTT AGACTGCGGT TCTGATCTGC 540
AGGCCTCGAT GCCCTGCGCC AGGGCACCAG GGCATGGGCA AAGCCCTCCC CCTACACAAA 600
GCAAGGGTGT TATGTCTACA ACCGAACGGG GACACTAAGA GCCCCCAACA TGCACGGTTT 660
TCATTCCAAA GAAAACCACC AGTTCTGAGT ACAACTTCCA CCTGGCTCTA TTAACTGAGT 720
ACACGTTTCC CCAGCACAGA AATCCTACAA ACTCCCGTGA ATGCTGTGGT GAAAAGCAGG 780
AGCTGCCAGG GCAAGATGGA TCGCACCTGT AATCCCAGCA CTTCAGAAGG CTGGGCGGAC 840
CACTTGAGCC CAGGAGTTGG AGCCCAGCCT GAGCAGAATG GTGAAACCGC TACGAAAAAA 900
GAAAAAGAAA GGAAAGAGAA AGAAAAGAAA AGAAAAAAAA AGAGAAAAAA CTAGCCGGGT 960
GTGGTGGCGT GTGGTTGTCC TACTCGGGAG CCTGAGATGG GAAGATCGCG CCACTTCTCC 1020
AGCCTGGACG GTACAGCGAG ACTTGTCTTA GGGAGGGGGG GAAAAAAACA ACAAAAAAAC 1080
CAGAGGCTAA GAGGTAACTC CGAGGATGAC AGAAAACACC AGAGTTTTTA AGAGATGTTA 1140
GAAGCCCTGG GAGCACTGAA CAAACCAGAA AGCTCCCGAC CCTTGATCCC TGAGCTCCAC 1200
CTAGCAAGTA CCGCGGCAGC TAACCTGGGA GAACACCCCA ACCAACAGAG ACTGAAATTC 1260
GCCTCCCAAG AGAGTAAGTG GATAGTTCTA AGCTGTCCCC AAACATGGCC TCACAAACGA 1320
AAACTAACCG TTGCGAACGG AAACAACTGA CCGGACAGAA CACAGCCACA AAACACGAGC 1380
CCGCACACTG AATTACAAAA ACACTTACGG CTCACCTACT ATTCGCACCA 1430