EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00728

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:29065840-29067120

Target genes

Number: 26
Name	Ensembl ID

EYA3	ENSG00000158161
RP5	ENSG00000228589
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RP1	ENSG00000229820
U6atac	ENSG00000221216
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNORA16A	ENSG00000207070
SNHG12	ENSG00000197989
TAF12	ENSG00000120656
RP11	ENSG00000229388
RNU11	ENSG00000209804
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
EPB41	ENSG00000159023
RP4	ENSG00000225616

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

NKX2-5	MA0063.2	chr1:29066602-29066612	ACCACTTGAG	+	6.02
SRF	MA0083.3	chr1:29066525-29066541	TGCCCATATATGGATC	-	6.02
SRF	MA0083.3	chr1:29066525-29066541	TGCCCATATATGGATC	+	6.16

HEDD

Diseases: AD,Huntington,Obesity,Parkinson,Prostate cancer,Schizophrenia and Sleep disorder
Number of disease enhancers: 1
Chromosome	Start	End

chr1

29066736

29066868

Enhancer Sequence

TTGAGACGTA GTGTCAACTC TTGTCACCCA GGCTGGAGTG CAGTGGTGCA ATCTCGGCTC 60
ACTGCAACCT CTGCCTACCA GGTGATTTTG CCCGCCTCAG CCTCCCAAGT AGCTGGGACC 120
ACCATGCCCG GCTAATTTTT TTAATTTTTT TGTAGAGATG GGGGTTTCAC TATGTTGCCC 180
AATCTGGTCT TGAATTCCTG AGCTCAAGAG GTCCGCCCTC CTCGACCTCT CAGAAGTGTT 240
GGGATTACAG GTGTGAGCCA CCATGCCCGG CTGAGTCAGG AAATTTTTGA GTTGAGCTGC 300
ACCTACATCT GTGGAGAATA CTTTATTTCT CACCGAAGGG AGGTGTAGGA TTTATAAAAT 360
GGAGTGAAAG TTAAAATACT GTTTAGCACA AATGAAGATC AATAACGTTG GAGGTTTTTG 420
TGGCATAGTC TTTTAAAGTT GCATGTAGAT TCAAATACTA ATATGACCTG TGCATGTAGA 480
AACTTGTTTG ATTCAGCAGT TCTTTTGTAT TATTATCTCT GATTCCAAAG ACAGTTACAC 540
TGTTGTAACT AATTTAACTC CCCAGATTAA TAGGCCAAAA GGAAAACTGG CAATATATCT 600
TCCAAAATGC CCTGAAAGGT CAAGAAATTT ATAAGTTCTG AACGTATGCT GTATGAAACA 660
TAGTTGGTAG TCCTGAATAA CTGCATGCCC ATATATGGAT CTGATTATCA CATAAAACTT 720
GTAGAATCCC TGTGTAAAAT TTTCAACACT GAAAGTATAG AAACCACTTG AGCAAGTGAT 780
TGGAAAAAAG TTTTCACAAA ACACAACCAG TTAATCAGGA AAAGTAGGGA AGGAAGTAGA 840
GGAATGAACT ATTAATAGGT TCCTGCTATT GAAGTAGTTT GCTTACATAA TCATTATAAC 900
AGGGAGAGTT GGAGCATTTA GAAGCATAAT TCTAGGTAGT TCTTGTAAAA CATTGTGTAA 960
TTCAAATTTT TTAGCTTGAG CATGTGGGAG CCTGCCAGTT CAGGTACAGA CATTCAACTG 1020
TGTCTTGGCA TAACCTGTGA TATTAAGTGC ATTTGATTTT TCTTTCTCAG GTAAGCCAAA 1080
GCTTAAATGT CTTTGTTTAA AAAAAATTTG GCTAATAATA TAAATCTTAG ATGAGTAGAT 1140
GAGGAAGGGT AACCTGAGAA TCTAGTTCAT TGTCTAGAGT AAGTCATCTA CTTTTTAGCC 1200
AATTTTTCAT TACCCTATTT TGGAATAATA CTTCAAGTTT AATCTGTTGA TTATAGGCTG 1260
AATTTCTTAT ATATGTGGAT 1280