EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00666

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:27442450-27443460

Target genes

Number: 29
Name	Ensembl ID

HMGN2	ENSG00000198830
RPS6KA1	ENSG00000117676
AL627313.1	ENSG00000243905
RP5	ENSG00000260063
ARID1A	ENSG00000117713
PIGV	ENSG00000060642
ZDHHC18	ENSG00000204160
SFN	ENSG00000175793
RP1	ENSG00000226698
GPN2	ENSG00000142751
NUDC	ENSG00000090273
GPATCH3	ENSG00000198746
C1orf172	ENSG00000175707
RP11	ENSG00000172746
OSTCP2	ENSG00000225294
TRNP1	ENSG00000253368
FAM46B	ENSG00000158246
SLC9A1	ENSG00000090020
SNRPEP7	ENSG00000225990
WDTC1	ENSG00000142784
TMEM222	ENSG00000186501
U6	ENSG00000206888
SYTL1	ENSG00000142765
MAP3K6	ENSG00000142733
CD164L2	ENSG00000174950
GPR3	ENSG00000181773
WASF2	ENSG00000158195
AHDC1	ENSG00000126705
STX12	ENSG00000117758

dbSUPER

Number of super-enhancer constituents: 15
ID	Coordinate	Tissue/cell

SE_01262	chr1:27443308-27444997	Adrenal_Gland
SE_08182	chr1:27443042-27446505	Brain_Inferior_Temporal_Lobe
SE_09350	chr1:27435013-27444745	CD14
SE_23485	chr1:27440655-27444367	Colon_Crypt_1
SE_24258	chr1:27441237-27442629	Colon_Crypt_2
SE_24258	chr1:27443094-27444020	Colon_Crypt_2
SE_31553	chr1:27441487-27442797	Gastric
SE_31553	chr1:27442876-27446707	Gastric
SE_37352	chr1:27442925-27447248	HSMMtube
SE_42522	chr1:27440149-27447035	Lung
SE_49041	chr1:27441450-27442850	Right_Atrium
SE_49041	chr1:27442852-27446947	Right_Atrium
SE_50517	chr1:27440047-27446702	Sigmoid_Colon
SE_52500	chr1:27440956-27446627	Small_Intestine
SE_53642	chr1:27440347-27446821	Spleen

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I027114

chr1

27440693

27447290

Enhancer Sequence

ACTCTTGAGA TCCTTGGGAC AGAGGAGGAA CTTCCCTCTC CATGCCCAAA GCCCTTCCTA 60
CTCTCAGGTA GGAATCTGGG CAGTGCTAGT ACGGTGACAA GTCAAAGTTC ACACTGCTGG 120
CTGGGCACGG TAGCTCACGC CTGTAATCCC AGCACTTTGG GAGGCCGAGG TGGGTGGATC 180
ACCTGAGGTC AGGAATTCAA GACCAGCCTG ACCAATATGG TGAAACCCTG TCTCTACTAA 240
AAATATAAAA ATTGGCCAGG CGTGGTGGTG GGTGCTTGTA TTCCCAGCTA CTTGGGAGGC 300
TGAGACAGGA GAATTGCTTG AACACAGGAG GTAGAAGTTG CAGTGAGCCG AGATCACGCC 360
ACTGAGCTCC AGCCAAGATC ACTCCACTGC ACTCCAGCCT GGGCAACAGA GCAAGACTCC 420
ATCTTGAAAA AAAAAAGTTC ACACACTGAA CACTATCCAG GCCCAGAATC CTGGCACAGT 480
GCCAAGCACC CTGAAGACAC TCAAAACACA TTGGGAAAAA AAGATGTCTC CATCCTAGGC 540
CAAGAGGACC TCGAAGGCAC CATGTGCATT CTCCTGATTT CAAAATAGAC ATGACCAAAA 600
GTCACTTTTT GTTCATCTAC TTCCCACATC AATAAAAGGG AAAATAATTC CAAAATCACC 660
CCTTTTGCTG AAAAGTCCCC CAGTCTTTGT ACTGTCCACC AGTCAACATC CAGTGTGTAG 720
CTGGCTGGTC CACTGGGAAG GGCTAGTCAT GTTGGACCCA AGTCTCTCTT GCTGTAGAGG 780
ATAAAGCCCA CATTTTCAGC ACTGCCTCTG TCATCTGCTC TTGCCTCATG TCCCATTCTC 840
CCCACTGTCA ACTCTTAGGT TTCAGCCTTG CCAAATTCCT TGCAATTGCC CCATATGAGC 900
CACATCCTCT TTTGCCTGCC AATCTTCACC TAGTCTAGTT CCTCTCTCTA GAAATCATTC 960
CTCTACCTCT ACCCCCACCA TATGTGGCTG ACACCATATC CTCTGCCTGC 1010