EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00175

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:8197410-8198530

Target genes

Number: 7
Name	Ensembl ID

VAMP3	ENSG00000049245
PER3	ENSG00000049246
TNFRSF9	ENSG00000049249
PARK7	ENSG00000116288
ERRFI1	ENSG00000116285
CTA	ENSG00000232848
RP5	ENSG00000232912

dbSUPER

Number of super-enhancer constituents: 15
ID	Coordinate	Tissue/cell

SE_02013	chr1:8194089-8198750	Aorta
SE_26216	chr1:8197016-8198791	Duodenum_Smooth_Muscle
SE_29143	chr1:8197334-8198595	Fetal_Intestine_Large
SE_33765	chr1:8195625-8199317	HCC1954
SE_34231	chr1:8196865-8199419	HCT-116
SE_36931	chr1:8192440-8199276	HSMMtube
SE_38712	chr1:8196572-8199390	HUVEC
SE_39254	chr1:8196718-8197796	IMR90
SE_39254	chr1:8197890-8198740	IMR90
SE_47106	chr1:8190652-8200946	Panc1
SE_52130	chr1:8192885-8199222	Skeletal_Muscle_Myoblast
SE_54673	chr1:8196830-8198827	Stomach_Smooth_Muscle
SE_55699	chr1:8197364-8199449	u87
SE_63913	chr1:8193083-8199304	HSMM
SE_67928	chr1:8197364-8199449	u87

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I008132

chr1

8192211

8199160

Enhancer Sequence

AGGCGGAGCT TGCAGGGAGC GGAGATCAGG CCACTGCACT CCAGCCTGGG TGACAGAGTG 60
AGACTCCGTC TCAAAAAAAA AAAAGAAAAA AAGGGGTGGA AATCATGTAG TTCCAGAAAG 120
CTAGCAGCTC CGCATTCTTG CTGGGAGGCA GGTGCTTGGA TTTGAGATTT CATCGGATTC 180
CCTCAAAGGG GATGAGGGAA ATTCATAAAA GGAAATTCAG ATGCTCTAAG GATGGAAGAA 240
TGGCTAGAAA GCAACTGAAA CCCAACAAAA ATCCACAGCA GCAGGCAACT CAGACGAGTG 300
TCTGTAATTT AAGTAGAAGG AGAAGCGCCA GCTTTCTTGT ATCATGAAAA CGTTTACAGT 360
TTCTGGGCTT AGAAGAAAAA AGCCCTAAAA CCTTGAGGAT AAAGGAATTC ATTTTCTAAA 420
ATTCAGTTCT ATAAACAACA CTGTGAAAGG CCAGAGGAAG GTTATCAGAT GGGATATTTG 480
TGTTTAATTT CTCAACTTAC CACAATCCAG GAGCAGATTT ATAGTCATTG GTTGGGAATG 540
TGTCAGCGAG CACCCGAGGT CAGGGAAATG TGGTCTTTTG CATTTTGAAA CACAGAACTG 600
TATGTTTCTT CAGCTGCCGA TTTACCAGCT CTCCGGAGAC AATAGGCTGA GTTCATTTTG 660
GCTGAGGGAC ACCGTGACTG ACCGATTCTC TCTGGTCGCA GAAATCACGG CTTTCCTTGT 720
TCAGGACATC TGACCAGCAT TAGGGACTGG TGAGTCAGTC AGCTGTAAAG GATGGTTCCT 780
CCAACTGGGG ATCTGAGAGA TCAGCAAAAA GGGATTTGGG AGGAAATGAA GTTTGTCATG 840
CTGGGCCAGA GTGGTCATAT CATTAGAGGC AGAAAAGTGT CTGCTTCCAT TTCTGTTTGT 900
TAAAAATAAT TAAACACCTT GGGAGTCTCA GAGAGGTGCT CAGCCCGGAG TCCTTACAGC 960
TGTCCTCAGG TTGCCGGTCC ATAGCTGACC CCTACGGAAG CTCATGGACA CCTGAAATTC 1020
GTTTTCATTT ATAAATGTAC ACCCATAATG AATCTCTGAT GAAAGGAAAC TTAAGGAACA 1080
CTGATGACGA AAAGAAAGGC CATCGATGAG AAGAGAATAA 1120