EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS129-00013

Organism

Homo sapiens

Tissue/cell

MCF10A

Coordinate

chr1:875640-876120

Target genes

Number: 34
Name	Ensembl ID

RP4	ENSG00000236679
NOC2L	ENSG00000188976
RP5	ENSG00000240409
MTND1P23	ENSG00000225972
MTND2P28	ENSG00000225630
SAMD11	ENSG00000187634
RP11	ENSG00000230699
PLEKHN1	ENSG00000187583
C1orf170	ENSG00000187642
HES4	ENSG00000188290
ISG15	ENSG00000187608
AGRN	ENSG00000188157
KLHL17	ENSG00000187961
RNF223	ENSG00000237330
C1orf159	ENSG00000131591
TTLL10	ENSG00000162571
SDF4	ENSG00000078808
B3GALT6	ENSG00000176022
UBE2J2	ENSG00000160087
SCNN1D	ENSG00000162572
PUSL1	ENSG00000169972
ACAP3	ENSG00000131584
CPSF3L	ENSG00000127054
GLTPD1	ENSG00000224051
TAS1R3	ENSG00000169962
DVL1	ENSG00000107404
MXRA8	ENSG00000162576
AURKAIP1	ENSG00000175756
CCNL2	ENSG00000221978
MRPL20	ENSG00000242485
SSU72	ENSG00000160075
C1orf233	ENSG00000228594
SLC35E2B	ENSG00000189339
CDK11A	ENSG00000008128

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ZNF740	MA0753.2	chr1:875673-875686	CCGCCCCCCCCCC	+	6.64
Zfx	MA0146.2	chr1:875661-875675	CAGGCCGCGCCGCC	-	6.13

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

SE_68417	chr1:838905-881008	TC71
SE_68418	chr1:838905-881008	TC71

Enhancer Sequence

GCCGGGGAGC GCGCTGTCAA TCAGGCCGCG CCGCCGCCCC CCCCCCCCGC CCCGCCGCGG 60
AGCCGGCCGT AAATAACCCT GTAACTAACC CGGCCGCTAG CGCGGGGGCG CTGGGCCCCG 120
CTGGGATCGA TGCGGGCGGC CGCGCCGGCT GGGCTCTGCG GGCTGGCACC CGGCCCGGGG 180
CGGGACCCAC CTCCGCTTTC GGGTAATTAA TTTATAAACA GAGGCGGCGG TGGAGCTGGC 240
GGAGCCTGCA TAGTGGGGGC TGCGGGGACT CGGGAGGCCC GGGCGGGAGG GAGAGGCCGA 300
GAGACCTGGG ACGCGGCGCC TTAGACGCGG GCGCTGCGTG CGCATTGGGG CGAGTGTGGC 360
CACGCGGGAC AGTGACCCTG CGCAGCCGGG ACTGGGCGAC CCCTGTGCTA GTGTGGCGTG 420
CGTGCGCGGG CGCTGCCTTG CCTTTGTGAC AAGCTTTGGC CAGCCGCGTC TACTATGGGG 480