EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS128-11347

Organism

Homo sapiens

Tissue/cell

MCF-7

Coordinate

chr19:55683350-55684460

Target genes

Number: 3
Name	Ensembl ID

RDH13	ENSG00000160439
DNAAF3	ENSG00000167646
PPP6R1	ENSG00000105063

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxd3	MA0041.1	chr19:55683812-55683824	AAACAAACAAAC	-	6.32
IRF1	MA0050.2	chr19:55683834-55683855	CAAGAGAAAAAGAAAGAAAAG	-	6.36
SOX10	MA0442.2	chr19:55683990-55684001	TCCTTTGTTTT	-	6.32
Sox3	MA0514.1	chr19:55683991-55684001	CCTTTGTTTT	+	6.02
ZNF263	MA0528.1	chr19:55684091-55684112	GAAGGAAGAAAAAAAAGAGAG	+	6.1
Zfx	MA0146.2	chr19:55683548-55683562	GAGGCCGAGGCGGG	-	6.01

Enhancer Sequence

GGCAGAAGAA TCGCTTGAAC CCGGGAGGCA GGGGTTGCGG TGAGCCGAGA TTGCACCATT 60
GCCCTCCATT CTGGGCAACA ACAGCGAAAC TCCGTCTCAA AATTAAAAAA AAGAAGAAGA 120
GAAGAAAAGA AATAGAAAAG AAAAGAAAAG AAGAAGGGCC GGGCGCGGTG GCTCACGCCT 180
GTAATCCTAG CACATTGGGA GGCCGAGGCG GGCGGATCAC GAGGTCAGGA GATCGAGATC 240
ATCCTGGCTA ACACGGTGAA ATGCCGTCTC TACTAAAAAT ACAAAAAAAT TAGCCGGGTG 300
TGGTGGCGGG CGCCTGTAGT CCCAGCTGCT CGGGAGGCTG AGGCAGGAGA ATGGCGTGAA 360
CCCGGGAGGA GGAGCTTGCA GTGAGCCGAA ATCGTGCCAC TGCACTCCAG CCTGGGCGAC 420
AAAGTGAGAC TTCATCTCAA AAAAACAAAA ACAAAAACAA AAAAACAAAC AAACAAAAAA 480
AAAACAAGAG AAAAAGAAAG AAAAGGAAAG ACAGAAAGAA AACAAAAAGG AAAAAAGAAA 540
AGAAAAAAGA AAGAGGTGAA GTTGAAATCA TTGGCTTTCC TTGCTGAACT CCAACCTCTC 600
TCGCAGGCTC TGGAGATTGT ATTCCCTGGC TCCGCGCCTC TCCTTTGTTT TGATGGCAGT 660
AAGTCGCTTG GGGGGTCAGG TCTGTGTTTG GATATTCTGG GGCCCCAGCA CTCAACAGAA 720
GACCTCAGGG AATATGGAAT GGAAGGAAGA AAAAAAAGAG AGGGAGGGAG GGATGCAGAA 780
ATGGGTATGA AAATCGATGT GAGTCATGGG TGAGCAAGCG AGTGGATAAA TTCATGGACA 840
AGCAAGGGAG TTCTCGCGGA CTCCTCACAG CCAGCGTGTG GCAGGAATTA TTATTATCCC 900
AACATTCTCC AGAGGAGGAA ACCCAGGCTC AGAGTGGTGA GTGAGGAATG AACGGGTGAG 960
AGTGTGAGGG AGTCCATGGG GTCAGGCCAG TCTCTCAGAG GCTTTCAGGA CGAACAGCAC 1020
TCACACCGCC CTGCGAGCGC CCATTCCTGG AAACGAGGTT TCCTCTTGGG TCCCAGCCCT 1080
TGCCCACCCC CATCAAGGAG CATGGGCCCA 1110