EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS127-00240

Organism

Homo sapiens

Tissue/cell

Macrophage

Coordinate

chr1:16163400-16166100

TF binding sites/motifs

Number: 1

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

IRF1

MA0050.2

chr1:16165519-16165540

AAAAAGAAAAAAAAAGTTAAA

6.05

dbSUPER

Number of super-enhancer constituents: 42
ID	Coordinate	Tissue/cell

SE_00733	chr1:16157088-16163690	Adipose_Nuclei
SE_01034	chr1:16163259-16164286	Adrenal_Gland
SE_04662	chr1:16159218-16164364	Brain_Anterior_Caudate
SE_07045	chr1:16159045-16164529	Brain_Hippocampus_Middle_150
SE_09659	chr1:16159157-16165128	CD14
SE_10503	chr1:16159866-16164586	CD19_Primary
SE_11576	chr1:16159398-16165553	CD20
SE_12320	chr1:16163495-16164065	CD3
SE_13503	chr1:16157416-16164524	CD34_Primary_RO01536
SE_14559	chr1:16157372-16164348	CD4_Memory_Primary_7pool
SE_15620	chr1:16159379-16164147	CD4_Memory_Primary_8pool
SE_17128	chr1:16163725-16164389	CD4p_CD225int_CD127p_Tmem
SE_17664	chr1:16159021-16164561	CD4p_CD25-_CD45RAp_Naive
SE_18153	chr1:16159042-16164512	CD4p_CD25-_CD45ROp_Memory
SE_19632	chr1:16159221-16164377	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20208	chr1:16159442-16164740	CD56
SE_20894	chr1:16157479-16164379	CD8_Memory_7pool
SE_22742	chr1:16159269-16164462	CD8_primiary
SE_23545	chr1:16160426-16164186	Colon_Crypt_1
SE_24061	chr1:16163211-16164171	Colon_Crypt_2
SE_24990	chr1:16160144-16164228	Colon_Crypt_3
SE_26781	chr1:16158347-16164299	Esophagus
SE_27856	chr1:16159874-16164754	Fetal_Intestine
SE_28793	chr1:16159852-16164776	Fetal_Intestine_Large
SE_29631	chr1:16159689-16164242	Fetal_Muscle
SE_31140	chr1:16159915-16164113	Fetal_Thymus
SE_31626	chr1:16160730-16164249	Gastric
SE_34600	chr1:16160524-16163717	HCT-116
SE_41004	chr1:16160285-16164333	Left_Ventricle
SE_42409	chr1:16160485-16164415	Lung
SE_48268	chr1:16158721-16163899	Psoas_Muscle
SE_48943	chr1:16160727-16164299	Right_Atrium
SE_50323	chr1:16160524-16164309	Sigmoid_Colon
SE_51394	chr1:16157970-16164477	Skeletal_Muscle
SE_52599	chr1:16160608-16164352	Small_Intestine
SE_53349	chr1:16160507-16164502	Spleen
SE_55286	chr1:16160406-16164272	Thymus
SE_60701	chr1:16157158-16178526	DHL6
SE_62015	chr1:16156216-16178176	Toledo
SE_62475	chr1:16156358-16178756	Tonsil
SE_63255	chr1:16159787-16176939	GLC16
SE_65551	chr1:16159644-16164074	Pancreatic_islets

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I015829

chr1

16155696

16165295

Enhancer Sequence

CCTTTAAAAA AAAAAAAAAA ATCAAAATGG TTTTAAAAGG TGTCATTTTC ATTGGAACGG 60
GGTGGGGCTC CTAGTGCCCG CCACAGTCCT CCACTCAGGC CGGCGGGGCG GGCCCTGGCC 120
TCGGCCTCGG TGCGTGGGTG CAGAGGGCCT AGGCCGCAGC TGCTTCTCCC TCTGCCGAAT 180
TGAGCTGGGC GGTGGTAACC ATAGTGGACC GCACTTCCTC TTCGTTCAGT GCCTCCCCTC 240
ATTCTTGTCC TTTAGGGGTG TGGTGGAAAT TATTACCAGG GTTATGGGTT CTTCAAAATA 300
CAAAAAGCCA AACCAAAACG AAAAAAAACC CTCTTGTGTA ATGAACTTCC CCCGCGTGCA 360
AAATTCGGGG AACCCGGGCG GCTTGCCTCT GCCTCCCGCC TGCGCGGTCT CCCTAGACGA 420
ATTGCCTCCC GCCTAGCCGC CTCCCTAGAC GTATTGTCTT GTGACGCACC CCCGAGTCCC 480
TGTAGGTGCA AGGCTTTAAA AAGGGAGCTT TTTCGAGAAG AAAGCACATC GGGGGCTCTT 540
AGAGGCCAGC GTGGACGCCG CAATCGCGGG GTGAGCCGCG CGACGACCCT ATGGCTCTCG 600
GAAGGTGCTG ACTTGGGGCG GGTGCGCGTG CACCACTGAC CGCGCCAGCC CGGGGTCGGG 660
CCGGGGCAGC GCGCTGGGCG GAGCCGCTCC GTGGCCCCTA ACAAAGGGCG AGCTCATTGC 720
CCGGTGGGAA CTGTGAGTTG GTGTCAGAGT CCTCCTAGGA ACTCAGTATA TGAAACTTAT 780
CTAGAGGGTG TTGAAGTACC AGCAAGCAAT AGAATTCTGA CAAGGCTGTA ATTTGAGGCT 840
TGGAAATGAC CAGGTTAACT GTCTCTTGAA TTCGTAGAAT TTGTTATAGA TTCTGTCTTA 900
ACATAATTTA TGCTTAATAG AGTCTTTAAA ATCGGCGTTC CTACGGTAAT GATACCACTG 960
ACTACTAAAT AAGAGGAAGA AAATTTGTGG CGTGTATGTT TTATAATTTG AAATAGGCAT 1020
ATCAAAGTTC TTTTGTGCTG TCTAATAGGA TCCTGGAGAT GGATTTATTT ATTTATTTAT 1080
TTAGAGACAG AGTCTCTCTG TGTCGTCTAG GCTGGAGTAC AGTGGCACGA ACAGAACTCA 1140
CTGTAGCCTC GACCTCCTGG GCTCAATGGA TTCGCCCACC TGCAGGCGCA CCGCCACACC 1200
CGGCTAATTT TTAAATTTTT TGTAGAGACA AGGGTCTTGC CTTGTTGTCC AAGCTGGTCT 1260
GGAACTCCTG GGCTCAAGTG ATCCTCCCAC CTCAGCCTCC CAAAGTGTTG GGGTTACAGG 1320
TGTGACCCAC TGGTCCAGGC CTGTTTGAAT TATTTACTTC AAACTACAGC TAGGTGTCTG 1380
AGAGGAGCAG CAGAAGAGCT TCAAACAAAT CTGCTGAAAA TTTCCATCCA TATGTAAAAG 1440
CTACTAAACA CAATTTATTT GGTATTGTTT TTGAGATTTC ATCAAATGCA GTTTGATAGC 1500
CTTCTCTGAA TTAATCAGAA GTCTTGGCCG GTTTTGGTGG CTCACGCCTG TAATCCCAGC 1560
ACTTTGGGAG GCTGAGGCAG GGGATCACTT GAGGTCAGGA GTTTGAGACC AGCCTGGCCA 1620
ACACGGTGAA AACCCGTCTC TGCTAAAAAT ACAAAATTTA GCCAGGCGTG GTGGCCGGTG 1680
CCTGTAATCC CAGCTACTCG GGAGGCTGAG GCACGAGAAT TGGTTGAACC CAGGAGGGGG 1740
AGGTTGCAGG GAGCCGAGAT CGCGACGCTG TACGCCAGAC AGGGCGACGG GGGGGAGACT 1800
CCGTCAAAAA AAGAAAAAAG AAGTTTTGAT TTGCGTTATT TACGTTCTGC TTGTGTCTTG 1860
ATGTTACAGA AGTTACAATC TCCTAGGCCT GGGTGTTTTG GCTAATGTGA TTATCACTTA 1920
TGGTGAAACA GTTAAGCTTT TTAATAATGG AGATTACCAG TAGGGTCTTA AAAGGTTGAG 1980
TGAGGGCCTG GCACCATGGC ATTCGCCTGT AGTCCGGTGG TTGGAGGGGG AGGATCCCTT 2040
GAGCCCAGGA GTTTGAGGTT GCAGTGAGCT ATGATCCTAC CCCTGCACTC TAGCAGGAGT 2100
GAAAGAATGA CACTCTCTCA AAAAGAAAAA AAAAGTTAAA TAAAATATCT GAGTTAACAT 2160
AGAGAGTAAT AACATTTTGT TCATGTGGGA TTTGTTAATA TATATGTAAT TTAATGCAGT 2220
TAACTATCAA CATTTCAGGG GAACCCTTAG CTAAAGTGAC CCAGATGCTG ACTTCCAAAA 2280
GTCATTTATT TTATTTTTTA TTGTTTTGAG ACGCAGTTTT GCTCTTCTTG CCTAGGCTAG 2340
AGTACAATGG TGCAATTTTG GCTCACTGCA ATCTCTGCCT CCGAAGTTCA AGCGATTCTC 2400
CTGCCTCAGC CTACTGAGTA GCTGGGATTA TAGGCATGCA CCACTAGGCC TGGCTAATTT 2460
TATATTTTTA GTAGAGATGG AGTTTCTCCA TGTTGGTCAG GCTGGTCTTG AACTCCCTAC 2520
CTCAGGTGAT CCACCTGCCT TCGCCTCCCA AAGTGCTAGG ATTACAGGTG TGGGCCACCG 2580
AGAGCGGCCC AAGTCATTTT ATTATAACTT TTTAATTTCA GATTATAAAA GCAATACCTG 2640
ACAGGGCTTG GTGGCTCACT TCTATAATCC CAGCACTTTG GGAGGCTGAG TCTGGAGGAT 2700