EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS117-00433

Organism

Homo sapiens

Tissue/cell

LHCN-M2

Coordinate

chr1:145008500-145009710

Target genes

Number: 21
Name	Ensembl ID

U1	ENSG00000201699
NBPF8	ENSG00000225241
PFN1P2	ENSG00000203843
WI2	ENSG00000215861
NBPF9	ENSG00000168614
RP4	ENSG00000254539
SEC22B	ENSG00000223380
NUDT4P1	ENSG00000177144
NOTCH2NL	ENSG00000213240
RP11	ENSG00000255168
NBPF10	ENSG00000163386
HFE2	ENSG00000168509
TXNIP	ENSG00000117289
POLR3GL	ENSG00000121851
LIX1L	ENSG00000152022
RBM8A	ENSG00000131795
PEX11B	ENSG00000131779
ITGA10	ENSG00000143127
PIAS3	ENSG00000131788
POLR3C	ENSG00000186141
RNF115	ENSG00000121848

dbSUPER

Number of super-enhancer constituents: 18
ID	Coordinate	Tissue/cell

SE_00153	chr1:145001862-145011598	Adipose_Nuclei
SE_03895	chr1:145007598-145010624	Brain_Anterior_Caudate
SE_09806	chr1:145007735-145011451	CD14
SE_13466	chr1:145007903-145011201	CD34_Primary_RO01536
SE_14437	chr1:145007534-145011276	CD4_Memory_Primary_7pool
SE_20767	chr1:145007319-145011677	CD8_Memory_7pool
SE_29575	chr1:145008249-145011156	Fetal_Muscle
SE_36911	chr1:144998593-145011780	HSMMtube
SE_39856	chr1:145007675-145010839	K562
SE_40587	chr1:145009039-145010075	Left_Ventricle
SE_42105	chr1:145009069-145010556	Lung
SE_45494	chr1:145007601-145010943	NHLF
SE_45547	chr1:145005239-145011577	Osteoblasts
SE_48047	chr1:145008955-145010739	Psoas_Muscle
SE_48578	chr1:145009118-145010048	Right_Atrium
SE_51073	chr1:145007537-145011565	Skeletal_Muscle
SE_55884	chr1:145007593-145011598	u87
SE_68443	chr1:144988869-145040149	TC71

GeneHancer

Number: 2
ID	Chromosome	Start	End

GH01I148873	chr1	145008224	145010710
GH01I149254	chr1	145008620	145010418

Enhancer Sequence

TGCACAAATT AGAAAAAATG TTCTATCCCA GTATTTAAGA TTTATTTATT TATTTGAGAC 60
AGAGTCTCGC TTTGTCGCCC AGGCTGGAGT GCAGTGGCTC GATCTCGGCT TACTGCAACC 120
TCTGCCCTCT GGGTTCAAGC GCTTCTCCTC CCTCAGCCTC CTGAGTAACT GGGATTACAG 180
GCGTGTGCCA CCATGCCTAG CTAATTTTTG TATTTTTAAT GGAGATGGGG TTTCACCATG 240
TTAGCCAGGC TAGTCTCGAA CTCCTGACCT CAGGTGATTC GCTCACCTCA GCCTCCCAAA 300
GTGCTGCAAT TACAGGCATG ATCACCACAC CTCGCCATAT TTAAGTTTTA AAAACATACA 360
TTAGTTTGGC AAGTACTCCC ATCTTGAAAT ATCTCTTTCA ATATTGCCTT AGATGTTATT 420
TAAATTAAAT CTTGTATAAT TTAAATTTTT TTATGCCCCA ATCAGATTGT ACATTCTTTG 480
AGAATGGAAT CTCATGTCCA TCTTTGTATA TTCTACAGCA CTCAGAAGCA TTCCTTTTAC 540
TCTGTAGTTC TATAAGAAAA AAAGTAATTG ATTTGATTCA TATCTTTGGT AATGTTGCTT 600
AGGAAAGAAA ACTTTGCATG GAAAGTCTGT GGAATGCCTG TGTGTGGAAG CCTTCTGTTT 660
CCCTTTTTAA ACATGAGATT GAAAAGGGAA AACAAACTGC ACTTGTGATT GCTGAAAGTT 720
TAATATTTAC CCCCTGCCTC CTAGTAACTT TTTGAATGTC TTAAGATACC AGTGAAAACA 780
AAACCAGTAT GTTTGGGACA CTGTGGTTTG GAAGAATGAA TGCATTTTTT TTAAATAAAA 840
ATGCACTTCA CTAGTAGTAT TCATTTTCCA AGGCTGTAAT TGGAGAGAAA CACTCGAGAA 900
GCACCAAAAT TGTGGAACAT AAAGAGGGCA GTGACAGGAC CCCAATTAAC CTAAATTAGC 960
ACAGGTTACC CAGACTGTGA TAACTCAGAG CTCCAGAAAC TCCCCAAAAT GAAAAAGCCT 1020
TCTGCTTTTA GCACTTTTTT TTTTCTTTTT TCTCCCCAAA GACTTCAAGA TTCAAGTGGA 1080
AAAGTTCACC AGGATGGGTG GGACCTGAAC AGGCTGACTC ACTGCGGTTA GATTCAGACT 1140
GCCAAGGAAA GCTGCAGAGT ACAGTTAGGC ATACACTACA GCTGGTTTTG ATGATATTTT 1200
CTTGTTAAAG 1210