Tag | Content |
---|
EnhancerAtlas ID | HS117-00113 |
Organism | Homo sapiens |
Tissue/cell | LHCN-M2 |
Coordinate | chr1:25040960-25041950 |
Target genes | |
TF binding sites/motifs | TF | JASPAR ID | Coordinate | Motif Sequence | Strand | -Log10(p-value) |
Nkx3-2 | MA0122.3 | chr1:25040970-25040983 | TTAACCACTTAAT | + | 6.98 | PLAG1 | MA0163.1 | chr1:25041746-25041760 | GGGGCCCAGTGGGG | + | 6.36 |
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| Number of super-enhancer constituents: 10 | ID | Coordinate | Tissue/cell |
SE_03668 | chr1:25040374-25042450 | Brain_Angular_Gyrus | SE_04517 | chr1:25039777-25046067 | Brain_Anterior_Caudate | SE_05379 | chr1:25039323-25045756 | Brain_Cingulate_Gyrus | SE_06312 | chr1:25039257-25047436 | Brain_Hippocampus_Middle | SE_07165 | chr1:25039649-25046190 | Brain_Hippocampus_Middle_150 | SE_08484 | chr1:25039603-25046303 | Brain_Inferior_Temporal_Lobe | SE_37045 | chr1:25038553-25042895 | HSMMtube | SE_52042 | chr1:25039096-25042494 | Skeletal_Muscle_Myoblast | SE_56631 | chr1:25039826-25042599 | u87 | SE_63833 | chr1:25039082-25042558 | HSMM |
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| Number: 1 | ID | Chromosome | Start | End |
GH01I024712 | chr1 | 25039058 | 25042452 |
|
Enhancer Sequence | GGCACAGTGC TTAACCACTT AATAAGTCTT CAATAAACAG TAGCTAAGTA TTTTGACACC 60 ATCACCCCAG GCTCCGTCTG GAAGGCTCTG GAAGGCAGTC TGTGGTGAAA TGGCAAGTCC 120 CAAACTCCCC ACTTTCTTAC CACCAACTCC CAAACCTCAT AATTTTCCTG GATGGCCTCA 180 GTGTCCTGCC TCTCCCTCCA GAGTTCTGTG GGGTTGGCTG GACCACCAGG AACAGAGTTC 240 TGGCATTTTC TATCACATCA CAGCTTTCAG TTTGGTAAAA GCCCCCGATA TATCAGGGCC 300 CAACTGGCAA GTCCCTCCTG CTCCAAAGTT TTGAAGGTTC CAGGGTCAAG CCTTGGCCCC 360 CAGCCTCCTC CCTCAGACCT GAGGCCGAGC ATAGTATATT CAGGGGCCTA GCTGCAGCAG 420 GTCCTGAAAC CTGCTACAGC AGTCCAAGCC CCCTCAGTCC TCCTCTTTCA TTTCTGAGCA 480 GGCCCAAGCA CCCAGCACCA AGAATGGCTG GACTTAGGGA CTCTGGGAGA GCCACGTGTG 540 CCAGGCTAGT GCCTGCCAGC TCTTAGGCTG ATCTTACAAT GGCTCCATTC ACCAGGGAGA 600 GGAGCTGGCC TGCCTGGAGC CCACGGGGTG ATGTTCCAGG CCCCAGGGGG ATGGGGTGGG 660 AGGTTAGAAA CTAAGAAAGC GGTTGTTAAG GCTGGGAGGG GTGAAGGTGC CCAGCCTCCA 720 CCACTACCAG CACCTTATGA CAAGGTGACC ACCTCACAAC TGGGACCATG AGAGATCAGA 780 TTCTCTGGGG CCCAGTGGGG GTGAGTAAGT GCGGGGGCAG ATGGAGGGAA AGAGTTAGTC 840 ATGGGCATTG CGGGGCAGGG AGGCTGGGCC CTTAGCCCAC GCTCTTGCTG GCATCTGAAG 900 GCCCGTAGCC AGGGGGTGAC GTGGTCTTGG TCCTTGAAGC AGCCCTTCCA GTAACAACTG 960 GGGCATCCCA GCCAGGCAGC CTTTGCCTCT 990
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