EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS117-00036

Organism

Homo sapiens

Tissue/cell

LHCN-M2

Coordinate

chr1:8197920-8199220

Target genes

Number: 8
Name	Ensembl ID

VAMP3	ENSG00000049245
PER3	ENSG00000049246
RP3	ENSG00000236266
UTS2	ENSG00000049247
TNFRSF9	ENSG00000049249
PARK7	ENSG00000116288
ERRFI1	ENSG00000116285
CTA	ENSG00000232848

dbSUPER

Number of super-enhancer constituents: 14
ID	Coordinate	Tissue/cell

SE_02013	chr1:8194089-8198750	Aorta
SE_26216	chr1:8197016-8198791	Duodenum_Smooth_Muscle
SE_29143	chr1:8197334-8198595	Fetal_Intestine_Large
SE_33765	chr1:8195625-8199317	HCC1954
SE_34231	chr1:8196865-8199419	HCT-116
SE_36931	chr1:8192440-8199276	HSMMtube
SE_38712	chr1:8196572-8199390	HUVEC
SE_39254	chr1:8197890-8198740	IMR90
SE_47106	chr1:8190652-8200946	Panc1
SE_52130	chr1:8192885-8199222	Skeletal_Muscle_Myoblast
SE_54673	chr1:8196830-8198827	Stomach_Smooth_Muscle
SE_55699	chr1:8197364-8199449	u87
SE_63913	chr1:8193083-8199304	HSMM
SE_67928	chr1:8197364-8199449	u87

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I008132

chr1

8192211

8199160

Enhancer Sequence

GAGCAGATTT ATAGTCATTG GTTGGGAATG TGTCAGCGAG CACCCGAGGT CAGGGAAATG 60
TGGTCTTTTG CATTTTGAAA CACAGAACTG TATGTTTCTT CAGCTGCCGA TTTACCAGCT 120
CTCCGGAGAC AATAGGCTGA GTTCATTTTG GCTGAGGGAC ACCGTGACTG ACCGATTCTC 180
TCTGGTCGCA GAAATCACGG CTTTCCTTGT TCAGGACATC TGACCAGCAT TAGGGACTGG 240
TGAGTCAGTC AGCTGTAAAG GATGGTTCCT CCAACTGGGG ATCTGAGAGA TCAGCAAAAA 300
GGGATTTGGG AGGAAATGAA GTTTGTCATG CTGGGCCAGA GTGGTCATAT CATTAGAGGC 360
AGAAAAGTGT CTGCTTCCAT TTCTGTTTGT TAAAAATAAT TAAACACCTT GGGAGTCTCA 420
GAGAGGTGCT CAGCCCGGAG TCCTTACAGC TGTCCTCAGG TTGCCGGTCC ATAGCTGACC 480
CCTACGGAAG CTCATGGACA CCTGAAATTC GTTTTCATTT ATAAATGTAC ACCCATAATG 540
AATCTCTGAT GAAAGGAAAC TTAAGGAACA CTGATGACGA AAAGAAAGGC CATCGATGAG 600
AAGAGAATAA TAAAATTTCT ACAAGTTGGC TGTAACATGA GTTTTCCCAG GCTTTTTGTT 660
TGTTTTGTTT TGGAGACAGG GTCTTGCTCT GTCACCCAGG CTGGAGTGCA GTGGCGCATT 720
TCTGCTCACT TGCAATCTCC ACCTTCTGGG TTCAGGTGAT CCTCCCACCT CGGCCTCCCG 780
AGTAGCTGGG ACCGCAGGCA CATGTCACCA TGCCTGGCTA ATTTTTTGTA TTTTTTGTAG 840
AGGTGGGGGT CTCGCCATGT TGCCCAGCTG GTCTCAAACT CCTAGACTCA AGTGATCCTC 900
CCGCCTTGTC CTCCCAAAGT GCTGGGATTA CAGGCATGAG CCACGGTGCC TAGCCCTTCT 960
CAGCTTTCTT AGCTCTTTCC TTCTCATCAA AATTAGACTT CTCCAGGCAA GGCGTGGTGG 1020
CTCACACTTG TAATTGAGCA ATTTGGGGGT GCCCAGGCAG AAGGATCCCT TGATCCCAGA 1080
AGTTCAAGAC CAGCCGGGAC AATGCAGTGA GACCCTATAA AAGAAAAAAA AAGTTGTAAA 1140
GAAAGAAACA AGAAAATTAA ACTTGTCCAG TATTAAAAAC TAAAAATATA ATGACAACGA 1200
TGTACAATTT TGCTTGTCAT TCTTTAGGAA TAAAGATTAC CCATATCCGT GATGTGTTAT 1260
TTGCTGAGGC GTTCTTGCAG CTTGCAGCCT GAAACTTTCT 1300