EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS108-00863

Organism

Homo sapiens

Tissue/cell

K562

Coordinate

chr1:25880560-25881350

Target genes

Number: 19
Name	Ensembl ID

RP4	ENSG00000233419
SYF2	ENSG00000117614
RP3	ENSG00000261349
RHD	ENSG00000187010
SDHDP6	ENSG00000224183
RP11	ENSG00000259984
TMEM50A	ENSG00000183726
C1orf63	ENSG00000117616
SDHDP1	ENSG00000238084
RHCE	ENSG00000188672
TMEM57	ENSG00000204178
LDLRAP1	ENSG00000157978
MAN1C1	ENSG00000117643
RP1	ENSG00000255054
FAM54B	ENSG00000117640
C1orf135	ENSG00000127423
PAQR7	ENSG00000182749
STMN1	ENSG00000117632
ZNF593	ENSG00000142684

dbSUPER

Number of super-enhancer constituents: 11
ID	Coordinate	Tissue/cell

SE_02010	chr1:25880182-25885060	Aorta
SE_03472	chr1:25880528-25880920	Brain_Angular_Gyrus
SE_04384	chr1:25880456-25881530	Brain_Anterior_Caudate
SE_05146	chr1:25875255-25899602	Brain_Cingulate_Gyrus
SE_05991	chr1:25873945-25899913	Brain_Hippocampus_Middle
SE_06990	chr1:25879194-25881343	Brain_Hippocampus_Middle_150
SE_16249	chr1:25881225-25883662	CD4_Naive_Primary_7pool
SE_17633	chr1:25869448-25897028	CD4p_CD25-_CD45RAp_Naive
SE_19031	chr1:25874010-25893424	CD4p_CD25-_Il17-_PMAstim_Th
SE_53664	chr1:25874991-25896829	Spleen
SE_65397	chr1:25877870-25884606	Pancreatic_islets

GeneHancer

Number: 2
ID	Chromosome	Start	End

GH01I025555	chr1	25880529	25880920
GH01I025554	chr1	25881198	25884635

Enhancer Sequence

CACCCCAGTC AGGAAGGGTG GGGGAACCAG GGACCAAGGA CCAGCTTCTT CCCAGGGTGC 60
CCTCGTCCCA GCTTGTTACT CCAGTTGGGT GTGTCTGAGC CTGGCCCTGC CCTTCATTCT 120
CCTTCCATCC AGCTTTTGGG CCTTGGCAGA GGGGAACCAT TGGACTTGCA AGGTCACGGT 180
TAGTGGCTTC CCTCCAGCCA TTATGGCCTC TTCCAGCCTC CCCACCCCCA GCTCAGGCTC 240
CCTACCAATG CATTGGTGAC TTATCAGCAC CAGGAAGGGT GGGGAGTTTG CTTTCCCTTG 300
ACTACCTGCC CAATGGCCTG AGAGACAGCA TAGCCCATCA GAGAGCAGAT TGCCCCCTCC 360
CTAACTTTGA GCAAGGGTGG GCCTTTTAAA TCCACTTCCC TTGGTGGCCT CAGACCCCTC 420
AGCTCAATGG ATGGAGCAGA GTACTCAGGA GTCATCCTGC TGGGTTGTGC TAGCTCATTC 480
AGTGCCGAGT CTGCAGGCCC TTCTAGCTGT GTGTCCTTGG GTAAGTCCCT TAGCCTCTCT 540
GAGTCCATCT CTGGGGAGAG GGAGGATGAC TCCAGGTCCA CGGTGCCTGA CAGATAGCTG 600
GTGCTCAGCA GATGCTGCTC CTGTTTCTAT TGCAAGAAGG TGCTGGCTGA GTGGTCTTGC 660
CCACACTGCT GCCAGTCACC TGAGCTGAGA TGGGCCCCGT GCCTGGGGCT TAGGAACAGT 720
GAAGTGTAAG CCATGAGGGT GGGTCTCAAG TGAGGCTGGC AGACTCCTCT GACTCCTGTC 780
TGCTCCCAAG 790