EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-55458

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr3:49202260-49203690

Target genes

Number: 32
Name	Ensembl ID

CCDC72	ENSG00000232112
SHISA5	ENSG00000164054
UQCRC1	ENSG00000010256
IP6K2	ENSG00000068745
PRKAR2A	ENSG00000114302
SLC25A20	ENSG00000178537
ARIH2	ENSG00000177479
C3orf71	ENSG00000221883
RP13	ENSG00000235236
P4HTM	ENSG00000178467
WDR6	ENSG00000178252
NDUFAF3	ENSG00000178057
DALRD3	ENSG00000178149
IMPDH2	ENSG00000178035
AC135506.1	ENSG00000241461
QRICH1	ENSG00000198218
QARS	ENSG00000172053
USP19	ENSG00000172046
LAMB2	ENSG00000172037
CCDC71	ENSG00000177352
KLHDC8B	ENSG00000185909
CCDC36	ENSG00000173421
RP11	ENSG00000225399
C3orf62	ENSG00000188315
USP4	ENSG00000114316
GPX1	ENSG00000233276
RHOA	ENSG00000235908
TCTA	ENSG00000145022
AMT	ENSG00000145020
NICN1	ENSG00000235261
DAG1	ENSG00000173402
BSN	ENSG00000226913

SNPs

Number: 1
ID	Chromosome	Position	Genome Version

rs4499638

chr3

49202782

hg19

TF binding sites/motifs

Number: 3

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

PBX1	MA0070.1	chr3:49202809-49202821	ACATCAATCATA	+	6.11
RREB1	MA0073.1	chr3:49203561-49203581	GGGTGGGGGTGGGGTGGGGG	-	6.74
RREB1	MA0073.1	chr3:49203560-49203580	GGGGTGGGGGTGGGGTGGGG	-	8.54

Enhancer Sequence

GTTAAGGCAT ACTTGGTGTG GGATCTGGGA TCTAGGTGAA AAAACAGGCG AGGATAGAGC 60
AACAAAGAAC CCTGAATGTT AGCCAAAGGG CCCAGACTTA CACCCACTGT CCATGCCCAT 120
CTGTTTCTCC AGCTGCTGCT GTTCATGTGT GGAGCTGGAG TGGGGTGGGG GAATCTCCCT 180
GCCCACCAGA AGTTCTGTTT TCAGTCTCTA GACAGGGTAC TCAGCAACCC ATTTTCTAGC 240
TCCAGAGGCA TGGAGACCTA ATCAAGAGTC GGACTTTTCT TCAACAGAAA CTAAAAAGCT 300
GATGAGTAGC AGGTGCCAAT GACATCTCTC TAGGCAACCA GGCAGACCAG GGACCAGGAA 360
GCCAGACCAA GATCCCAAAG TTTAAGGACA ATGGGAGCCA AAGGCTGCAA GTAGGATGGT 420
GAGTCAAGGG GACATTAGCG GTATGCACTG TCCTACCTAA GACTTGGAGG GCCACAGACC 480
TCAGTACAGC CCAGATGGAG GTGACTGAGA ACACCTAACT ACTCCCAGAC TTCTTTAAAG 540
AAGCTGTGGA CATCAATCAT AACTAACATC TAATACCCAA CCCAACACTG AGGGTTCCCA 600
GAAGCAAGAG GCAGCTCCCC AGCTGCACCA GAGCATTAAA AGATCAGCCA GGATCAGGCA 660
GGTCCCTCGG GCCATGAGGC CCGTCTGTGT AGTTTCTTCC CACCGCTCTA ATGCAGCAGA 720
TGAAGTCTTC AGAATACCCT GGAGGAAATG CCCTAGGGCT CTTTGTTTGG AAACATTCTT 780
GGATCCTCAG GTGTCTTGGG CACTTCCCCT CCCCAGAGAC CGTTCTCCAA GCACAATCCT 840
TGCACATGAC TTTAGTTCTT TATTAATGTT TTTTGAAGGG ATGTAGTTCC CAGAGCTGTG 900
AACTGTAGAA GAGAGAGGGA CCTATTTCCC ACCCTCACAC GCGCCCCAGC GCAAATATTT 960
GGGGTGACCT GGGGGCTCTT CCACCCAGGT TAGGCTGGGC TCTTGGGAGG GGTTTTCTGG 1020
GCTTTCGAGA AGCTTCGGAA ACAGAGGCTC CTGCCCGGCC TCCGACTTCC CTTCACACGT 1080
GCCCCCGGGG AAGGCAGGAG AAGTTGACGG AAGATAGGGC GTGAGAGAGG CGCCACACAG 1140
GCAGACCGGG GGAGGGGGCA GATCGGGGCC CTCAGGCTGG GAATGCACGT CCTTAGGGCC 1200
CAAGCCGTGA GGCGGGGGTC ACTGAGGCAG CGAAATGTAC AGGGTGAACG GTGCTAGCCC 1260
TACCGGGACC GCACAGCCCC AGGGTGGGGT CGCTGGGCGC GGGGTGGGGG TGGGGTGGGG 1320
GGTCTCGGCC AGGCCGGCGG AGGACGCGGG TCCGGGAAGA GTTGGCCGCT TGCCCGTCCG 1380
CCCTGCCGCC TCGCGGGCCG CCCCTCCGCG GCGCGGCTAG GCCCGCGGCT 1430