EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-55451

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr3:49104160-49105500

Target genes

Number: 29
Name	Ensembl ID

CCDC72	ENSG00000232112
SHISA5	ENSG00000164054
UQCRC1	ENSG00000010256
SLC26A6	ENSG00000225697
PRKAR2A	ENSG00000114302
SLC25A20	ENSG00000178537
ARIH2	ENSG00000177479
C3orf71	ENSG00000221883
RP13	ENSG00000235236
P4HTM	ENSG00000178467
WDR6	ENSG00000178252
NDUFAF3	ENSG00000178057
DALRD3	ENSG00000178149
IMPDH2	ENSG00000178035
AC135506.1	ENSG00000241461
QRICH1	ENSG00000198218
QARS	ENSG00000172053
USP19	ENSG00000172046
LAMB2	ENSG00000172037
CCDC71	ENSG00000177352
KLHDC8B	ENSG00000185909
CCDC36	ENSG00000173421
RP11	ENSG00000225399
C3orf62	ENSG00000188315
USP4	ENSG00000114316
GPX1	ENSG00000233276
AMT	ENSG00000145020
NICN1	ENSG00000235261
DAG1	ENSG00000173402

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Foxq1	MA0040.1	chr3:49104513-49104524	AATAAACAATT	-	6.02
NKX2-3	MA0672.1	chr3:49105295-49105305	ACCACTTGAA	+	6.02

Enhancer Sequence

ATTGATTTTT CTTAGAAATC ATTTAAAAGG CCAAGTGAGG TGGGTCATGC CTGTAATCCT 60
AGCATTTTGG GAGGCCAAGG CAGGTGGATC ACCTGAGGTA AGGAGTTCGA GACCAGCCTG 120
GCCAACATGG TTAAACCCCG TCTCTAATAA AAATACAAAA ATTACCCAGA CGTGGTGGTG 180
TGCACCTGTA ATCCCAGCGA CTCAGGAGGC TGAGGTAGGA CAATAGCTTG AACCTGGGGG 240
GCGGAGGTTG CAGTGAGCCG AGAACATGGC ACTGCACTCC AGCCTCATCG ACAGAGACTC 300
TGTCTCAAAA AAAAAGAGAG AGAGAAATTA CTTATCAATG CTCAAGCTTC CAAAATAAAC 360
AATTAAATGG CTAATGTGGC TAATGGCTAT TGTTAGCAGA AATACTAGGG AGTTAGAACC 420
TCCCAATCCA CCTCCTAAGT GGTGGCACCT GTCCGTCACT CCAGAAATAA ACAAAATTAC 480
AAATAATCTG ATGTCACTTT ATATCCAAAA TAGTAAGAAT TTAAAATTAG GGGAATAAGA 540
GTTAAGAGTA AATTTAACGG CTGGGTGCGG TGGCTCACGC CTGTAATCCC AGCACTTTGG 600
GAGGCCAAGG TAGGCAGATC ACAAGGTCAG GAGATCAAGA CCATCCTGGC TAACATGGTG 660
AAACCCCGTC TCTACTAAAA ATACAAAAAA ATTAGCTGGG TGTGGTGGTG GGCACCTGTA 720
GTCCCAGCTC CTTGGGAGGC TGAGGCAGGA GAATGGTGTG ATTCCAGGAG GCGGAGCTTG 780
CAGTGAGCCG AGATAGCACC ACTGCACTCC AGCCTAGGTG AAAGAGCAAA ACTCTGTCTC 840
GAAAAAAAAA ACAAAAAAGA AATTAAATGT TATTTATATT ACTTCCCTTC AATTTTTTTA 900
ATTTATATAA GAGCCAAGCT TTTTCACTGG GTAGAAAATT ACTAAATAAT CATATTAAGA 960
ATCTGGCAAA AGGCCAGGCG CGGTGGCTCA GGCCTATAAT CCCAGCACTT TGGGAGGCCA 1020
AGGCAGGCGG ATCACGAGGT CAAGAGATTG AGACCATCCT GGCCAACCAA CATGGTAAAA 1080
CCCTGTCTCT CCTAAAAATA CAAAAAAAAT TAGCTCAGAA GGCGGAGGCA GGAGAACCAC 1140
TTGAACCCAG GAGGCAGAGG TTGCAGTGAG CCTAAATCAT GCCACTGCAC TCCAGCCCAG 1200
GCGATAGAGC GAGACTCCGT CTCAAAAAAA AAAAAATTTG GAAACAAACA AAAAAAACAA 1260
CCCACAATTC TTTCATTCAG ATATAACAAC TCTCAACACC TTTTTTAAAA AAAAGTATTA 1320
CATTTTACTT GAAATTAAAA 1340