EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-40171

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr19:39905320-39905630

Target genes

Number: 16
Name	Ensembl ID

ECH1	ENSG00000104823
PAK4	ENSG00000130669
LRFN1	ENSG00000128011
GMFG	ENSG00000130755
SAMD4B	ENSG00000179134
AC005239.1	ENSG00000241983
PAF1	ENSG00000006712
MED29	ENSG00000063322
ZFP36	ENSG00000128016
PLEKHG2	ENSG00000090924
RPS16	ENSG00000105193
SUPT5H	ENSG00000196235
TIMM50	ENSG00000105197
DLL3	ENSG00000090932
EID2B	ENSG00000176401
EID2	ENSG00000176396

dbSUPER

Number of super-enhancer constituents: 29
ID	Coordinate	Tissue/cell

SE_00388	chr19:39887713-39905863	Adipose_Nuclei
SE_06347	chr19:39887560-39906641	Brain_Hippocampus_Middle
SE_07537	chr19:39896158-39905559	Brain_Hippocampus_Middle_150
SE_10961	chr19:39887353-39906237	CD20
SE_17342	chr19:39890202-39905757	CD4p_CD25-_CD45RAp_Naive
SE_17784	chr19:39887382-39905568	CD4p_CD25-_CD45ROp_Memory
SE_18577	chr19:39887582-39905820	CD4p_CD25-_Il17-_PMAstim_Th
SE_19172	chr19:39891244-39905495	CD4p_CD25-_Il17p_PMAstim_Th17
SE_22320	chr19:39887549-39905712	CD8_primiary
SE_25867	chr19:39891223-39905590	Duodenum_Smooth_Muscle
SE_26556	chr19:39905239-39906296	Esophagus
SE_28560	chr19:39895834-39905492	Fetal_Intestine_Large
SE_29683	chr19:39895470-39905595	Fetal_Muscle
SE_31423	chr19:39895183-39906154	Gastric
SE_38851	chr19:39896429-39905653	HUVEC
SE_39103	chr19:39903084-39906141	IMR90
SE_40716	chr19:39895467-39906953	Left_Ventricle
SE_42175	chr19:39891508-39906312	Lung
SE_44274	chr19:39903136-39905845	NHDF-Ad
SE_47104	chr19:39864576-39910331	Panc1
SE_48102	chr19:39891272-39905352	Psoas_Muscle
SE_48652	chr19:39895515-39906190	Right_Atrium
SE_50060	chr19:39891457-39906718	Sigmoid_Colon
SE_51233	chr19:39891468-39905704	Skeletal_Muscle
SE_52346	chr19:39891452-39905740	Small_Intestine
SE_53389	chr19:39895487-39906539	Spleen
SE_54591	chr19:39891345-39907174	Stomach_Smooth_Muscle
SE_57955	chr19:39896720-39906066	VACO_9m
SE_62278	chr19:39887834-39905563	Tonsil

Enhancer Sequence

TTTGGACTTT ATCCCCAGGG GCATGAAGGG GTTACACTCA CGGGAGTAAT ACAGTCAGAT 60
AGACAAATTA ATAAATGTCT ACCTAGCTGA TTCATGGAGG TGGATTAGAG AAATGGAGGC 120
CAGAAGTCCA GAGAGGACCC TGATGGGAGA GGATGGGACT GGACCAAGAC AGGGCAGTGG 180
GGAGAGGAGG AAGGAGCCTG TGGGAAAGCT GTTGGACAGG TGTGGGTGAG GGTGTGGGCT 240
GAACGCATGA AAGGCTGTGG AAGTCCGTGC ATGGGGAGAT TTCTCTGACC TCCTGTTCCA 300
CACCCCAGCA 310