EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-40114

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr19:39227200-39227790

Target genes

Number: 22
Name	Ensembl ID

C19orf33	ENSG00000167644
YIF1B	ENSG00000167645
KCNK6	ENSG00000099337
CATSPERG	ENSG00000099338
PSMD8	ENSG00000099341
GGN	ENSG00000179168
SPRED3	ENSG00000188766
FAM98C	ENSG00000130244
RASGRP4	ENSG00000171777
MAP4K1	ENSG00000104814
EIF3K	ENSG00000178982
ACTN4	ENSG00000130402
CAPN12	ENSG00000182472
ECH1	ENSG00000104823
HNRNPL	ENSG00000104824
RINL	ENSG00000187994
NFKBIB	ENSG00000104825
SIRT2	ENSG00000068903
CTC	ENSG00000262484
MRPS12	ENSG00000128626
SARS2	ENSG00000104835
PAF1	ENSG00000006712

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF5	MA0599.1	chr19:39227701-39227711	GCCCCGCCCC	+	6.02
KLF5	MA0599.1	chr19:39227738-39227748	GCCCCGCCCC	+	6.02
SP1	MA0079.4	chr19:39227698-39227713	CTGGCCCCGCCCCTC	+	6.11
SP4	MA0685.1	chr19:39227698-39227715	CTGGCCCCGCCCCTCCA	+	6.11
ZNF263	MA0528.1	chr19:39227582-39227603	CCCTCTTGGCCCTGCTCCTCC	-	6.23
ZNF263	MA0528.1	chr19:39227598-39227619	CCTCCACTCCTCCCCTCCTCC	-	7.27

dbSUPER

Number of super-enhancer constituents: 13
ID	Coordinate	Tissue/cell

SE_23062	chr19:39226613-39227579	Colon_Crypt_1
SE_23732	chr19:39226611-39227655	Colon_Crypt_2
SE_24739	chr19:39226615-39228414	Colon_Crypt_3
SE_26525	chr19:39226479-39227609	Esophagus
SE_27614	chr19:39226603-39227881	Fetal_Intestine
SE_28533	chr19:39226566-39227921	Fetal_Intestine_Large
SE_31384	chr19:39226503-39227524	Gastric
SE_34299	chr19:39226568-39227467	HCT-116
SE_47461	chr19:39226619-39227436	Pancreas
SE_50056	chr19:39226654-39227645	Sigmoid_Colon
SE_52339	chr19:39226677-39227548	Small_Intestine
SE_56725	chr19:39226638-39227687	VACO_400
SE_65266	chr19:39226624-39228633	Pancreatic_islets

Enhancer Sequence

AATCTGAAAG AAGCAAGAGC AAGGGGCGTC GGGGCAGGGG AGAGGTGGCC GCCGCTCAGG 60
GTCTCCTCCC TGCCCCTTCT CACCTCTGTG CTCTCTCCCT CCTTCTTCGT CCTATTAGAC 120
CCTTATTGAA CCTTTGCCCC GCAGTCCCCG ACCCAGGCCC TCGCCGACCC CTCCCCAACT 180
CTTCCTTCCC CATCTGCGCT CCCAGCGCCT TCTCTGTATC CTTGGTCCCC TCTGGCCCTT 240
CTAACCCCCA GCCTCTCTCT GTCCCTAACC TCGTCCCTCT GTCTGTCCCT GAGCCCCTCC 300
CTCTCATTCC CTTAGCTCCC TCTCCCCTCT GAGACCTGGC CCCCCAGCCC TACTAGCCCC 360
CTACTCCCCT CCCAGCGCCG CCCCCTCTTG GCCCTGCTCC TCCACTCCTC CCCTCCTCCC 420
CGATCCTCTT CAGTCCCACC CCTCCACCAC TCCCCCTCTT CCCCCTTGGC CCCGCCCTCC 480
ACACCTCCCC TCTTCCCACT GGCCCCGCCC CTCCATGCCT CCCCCGCTCC TTGGCCCGGC 540
CCCGCCCCTC CACCCTCCGG GTTCCCTCCA GCCTCAGCTT TGCCCAGGAC 590