EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-39108

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr19:13056840-13058480

Target genes

Number: 31
Name	Ensembl ID

ZNF709	ENSG00000242852
CTD	ENSG00000196826
ZNF564	ENSG00000249709
ZNF791	ENSG00000173875
ZNF490	ENSG00000188033
MAN2B1	ENSG00000104774
WDR83	ENSG00000123154
WDR83OS	ENSG00000105583
DHPS	ENSG00000095059
FBXW9	ENSG00000132004
TNPO2	ENSG00000105576
C19orf43	ENSG00000123144
ASNA1	ENSG00000198356
BEST2	ENSG00000039987
HOOK2	ENSG00000095066
JUNB	ENSG00000171223
PRDX2	ENSG00000167815
RNASEH2A	ENSG00000104889
MAST1	ENSG00000105613
DNASE2	ENSG00000105612
GCDH	ENSG00000105607
AD000092.3	ENSG00000240616
SYCE2	ENSG00000161860
FARSA	ENSG00000179115
CALR	ENSG00000179218
RAD23A	ENSG00000179262
GADD45GIP1	ENSG00000179271
NFIX	ENSG00000008441
TRMT1	ENSG00000104907
IER2	ENSG00000160888
CTC	ENSG00000213253

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ONECUT1	MA0679.1	chr19:13057864-13057878	CAAAAATCAATAAA	+	6.48
ONECUT2	MA0756.1	chr19:13057864-13057878	CAAAAATCAATAAA	+	6.78
ONECUT3	MA0757.1	chr19:13057864-13057878	CAAAAATCAATAAA	+	7.31
Zfx	MA0146.2	chr19:13057071-13057085	CAGGCCCCGGCTCC	-	6.13

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

SE_13019	chr19:13055768-13057891	CD34_Primary_RO01480
SE_14208	chr19:13055508-13058226	CD34_Primary_RO01549
SE_45493	chr19:13056205-13058202	NHLF

Enhancer Sequence

GCCGGGCCGG AGCCCGGGGG CGGGAGCGAC GGGTTTCGGG GGTGGGGTGG GGGCGGGGAG 60
GCTAGAATCC CAACGGGAGG GGCAGGGAGG ACGGCGCGGG TCGGCCCTGC CCAGACCCCC 120
GACCTGCCCG ACTTTCCTGG ACCCCCCGAT GGTCTTTGGC CCAGCCCCCA GCCGATCGGG 180
CGGCGCTCCT GCGCCGGTCT CCGGGCGAGG CCCCACCCCC GGGGCGCTGG CCAGGCCCCG 240
GCTCCAATGT CAGCGCTCTC GCGGGGCGCG GGAGTCACAA GCTCGGATTC CTGGGCAGGC 300
CAAGCTCTCC AAGACTGGGC TCCACGTTCC CAGCTTTGCA GGCGTCTCCT TGGGACACTG 360
GTGGTCGAAT CTAGGAGTAA TGACCAGGAG ATACTGAGTA GTGACGACAA CAACGATGTT 420
AATGATAATA AACGGGTCTC AGTCTTTATA ATTTTGGTGG TCCGTGTTTG TTGGCCGTTT 480
ACTTTTTATC AGTCACCGAG TGTTGTAGTG TTGTTTTACC GCTCTGCAAA ACGGGCTTGT 540
CATTGGGGAC CTCTGATCAT TTTACAGATG TGGAAACCTA GGGATTGAGG AACTTTGCCA 600
CAGTCACACA CAAGTAATGG CAGAGCTGGG ATTCAAATTC GGTTCTGCCT CGTGTGAGCG 660
TCCACGATAT AAATATTATG CTGCCTTTTT AGTCAAAAGT AGAATTAGGA CCTAATTCAA 720
ACATACTGAA TGTCTATTGG GTACTTGGCG CTTTTTGCAT AGTGAGGGAG ACATTGAAGT 780
CCACTTTTTG TAGAAAAGGA AACACACATT TTTTGATCCG CTCAAGTGTT TGGCTTTGGG 840
CAAGTTAACC TGCCTACCTG TCTGTGCCTC CGTTTTCTCA AATATCAAAT GAACCGGTCG 900
CCTGCTGGCT TCCGCCTGTA ATCCCAGCAC TTAGGGAGGC AGAGGGAAGA GGAGCCCTTG 960
AGCCTAGGAA TTCGAGATCA TCCTGGCAAC ACAGTGAGAC CCCGTTCTCT ACAAAAAAAA 1020
GAAACAAAAA TCAATAAATA AAATGAGACC AATTAAACGT ATTTCATAGG AAACTTAAAA 1080
GGTATGACAC ATATACATTT ACAGTAGCAC TATTGGCCAG GCACGGTGGC TCATGCCTCT 1140
AATCCTGATG ATTTGGGAGG CAGAGGCAGG AGGATTGCTT GAGGCCAGGA GTTTGAGACC 1200
AGCCAGTCTA ACATAGGGAG ACTCTTATCT ACAAAAAAAA ATTATTTTTA ATTAGTCTGG 1260
AGTGGTGGTG TGTACCTTTA GTCCTAGCTA CTCCCAAGGC TGGACAAGAG TACCAGTTGA 1320
GCCCAGGAGT TTGAGGCTGC AGTCAGCGAT GATCGTGCCA CATCAATCCA GCATGGGCGG 1380
CAGCGAGATC CTGCCTCTTA AAATTAAAAA ATATCACTAT TAACTATTAG TCACTTATTG 1440
TCCAAGGTAG AGTGTAGAGT GGGGGACTGT CCCCTTTATT CTGTTAATTA TACTTTATAC 1500
TACCCGAAAT TACATTTTCT TCACATTAGT GTTCTCTCAT TGAGAGCAGG GACTTACTTG 1560
TGTTGAGTTT GTTCTGTGCT GTGGCCTCTG TGTCTAAAAC AGCACCTGGC ACATAATGGG 1620
TGTTTAGTAT AAGTAAATAC 1640