EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-38659

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr19:6423090-6424460

Target genes

Number: 12
Name	Ensembl ID

RFX2	ENSG00000087903
ACSBG2	ENSG00000130377
CLPP	ENSG00000125656
ALKBH7	ENSG00000125652
PSPN	ENSG00000125650
GTF2F1	ENSG00000125651
KHSRP	ENSG00000088247
SLC25A41	ENSG00000181240
SLC25A23	ENSG00000125648
TUBB4A	ENSG00000104833
TNFSF9	ENSG00000125657
SH2D3A	ENSG00000125731

TF binding sites/motifs

Number: 6

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Arntl	MA0603.1	chr19:6424390-6424400	GCACGTGACC	-	6.02
Foxd3	MA0041.1	chr19:6423289-6423301	AAACAAACAAAC	-	6.32
Foxd3	MA0041.1	chr19:6423293-6423305	AAACAAACAAAC	-	6.32
PLAG1	MA0163.1	chr19:6424170-6424184	GGGGGCTAAGGGGG	+	6.95
USF2	MA0526.2	chr19:6424333-6424349	CGCCCACGTGACCCCG	-	6.47
ZIC3	MA0697.1	chr19:6424303-6424318	GCGCAGCGGGAGGGC	-	6.25

Enhancer Sequence

GACAGACTGG CTGACATGGT CAAACTCCAT CTCTACTAAA AATACAAAAA TTAGCTGGGT 60
GTGGTGGTGC ACACTTATAA TCCCAGCTAC TCGGGAGGCT GAGGCAGGAG GAGCACTTCA 120
ACTGGAGAGG TGGAGGCTGT GGTGTGCTGA GATCGTGCCA CTGCACCCCT GCCTGGGTGA 180
TATTGAGACT GTTTCCAAAA AACAAACAAA CAAACAAAAA ACCAAGACTC TATGGGACAC 240
AAGTTACATC TCAGACACGT GAAGAGCAAC TTTAAAGAAA CCTCAACCCA GCAAACTTAG 300
GATCAGAGTC TGGGGTTTAG AAACCCAAAC CATGTTAAGA ATCTCCCTTT CCACCAGTCT 360
CCATTTTTCT ACGCTGCCCT AGAGCCAAAA CTCATGGGAT GCCCACAGGG GGCCTGTCCC 420
CACCAACTGA CAGCACCAGC TTCCTCCCTT CAAGCTGTCC CAGAATCAGA CGGTTCCATG 480
GGCAATAAGA CCAAATGCAC GCTAGAACCC ACCCAACTCC AAGGGTGAGA GAGACGACAG 540
AGGGCCAGAA CACAGGCGTT CACTTAACGG GACCTCCCAC CTTGGGAGGA GCCAGTCTCT 600
AGCCCCGGAG GCATTGGGAC AGCCCAGGAG CCGGTCGGCG GCAAAGTCCT CCCATTCTAC 660
CGACCCCCAC CCCTCCAGGC CATGGGGAGG CTGCAAATGG AGCTGGAGAG GTCAGTCCTA 720
GCAGCATGTG ACACTTCCTT GTCATTACGC CTCAATACAC GGGGGTGGGA GACCCTCCCT 780
TCTTTCCCCC AAAGAGACAG ACCACGCTTT CAAGCCACCA AAGCATCCAA GAGCCAGTCC 840
CCATGCTCGT CTTCCCCATT TCGCCCAAGT GCTCAGCCCT AGACAGGTCC CCATCCACTT 900
TCCCGACTGA AGAGGAAGGA CTGTCCCTCC CACCCCCACA ATGTCCCTTT CTCCTAGAGA 960
GGGGACAGAA ATGGGACTGG GTTGGGGGCA AACACTGCCC TTTGCCCTGA TATGGAGGGG 1020
AGAGTAAAGG CCCTCCGCCC GGGAAGGTGG ACCCCTGCCT CCAGGCATGT CCTAAGGCCG 1080
GGGGGCTAAG GGGGGGGTCC CAAAAGTGCG TCTCCGAGCT CCGGGGCGCC TGCACACCCA 1140
GGCGCCGCTC CTGGTGACCC CCAGTGCGCC CCTACTCCCT GCAGGGGGGT CACCCGTTGG 1200
GATCCCACTC GAGGCGCAGC GGGAGGGCCA GGCCCCCGCC TACCGCCCAC GTGACCCCGC 1260
GACGGCCCCG GCCCCCCTCC GCGACCCTGC GCGCGCGCGC GCACGTGACC CCCGCCCCCT 1320
CCCCCGCCTG CGCGCGCGCG CGAGCGCGCC CCTCAGGCCC TCGGCCTCCT 1370