EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-38351

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr19:2041200-2041830

Target genes

Number: 17
Name	Ensembl ID

KLF16	ENSG00000129911
CTB	ENSG00000261526
FAM108A1	ENSG00000129968
SCAMP4	ENSG00000227500
ADAT3	ENSG00000213638
AC012615.1	ENSG00000198683
MKNK2	ENSG00000099875
MOB3A	ENSG00000172081
IZUMO4	ENSG00000099840
AP3D1	ENSG00000065000
DOT1L	ENSG00000104885
PLEKHJ1	ENSG00000104886
SF3A2	ENSG00000104897
AMH	ENSG00000104899
OAZ1	ENSG00000104904
LSM7	ENSG00000130332
TIMM13	ENSG00000099800

dbSUPER

Number of super-enhancer constituents: 52
ID	Coordinate	Tissue/cell

SE_00410	chr19:2040386-2053186	Adipose_Nuclei
SE_00877	chr19:2038292-2043919	Adrenal_Gland
SE_02925	chr19:2041099-2042102	Bladder
SE_03565	chr19:2041256-2042128	Brain_Angular_Gyrus
SE_04258	chr19:2040409-2043849	Brain_Anterior_Caudate
SE_05392	chr19:2040460-2043853	Brain_Cingulate_Gyrus
SE_06065	chr19:2039897-2052942	Brain_Hippocampus_Middle
SE_07327	chr19:2040786-2043770	Brain_Hippocampus_Middle_150
SE_08493	chr19:2040572-2043970	Brain_Inferior_Temporal_Lobe
SE_08907	chr19:2041532-2041850	Brain_Mid_Frontal_Lobe
SE_10185	chr19:2040263-2045628	CD19_Primary
SE_11386	chr19:2039336-2059166	CD20
SE_11985	chr19:2040034-2043882	CD3
SE_14045	chr19:2040892-2043248	CD34_Primary_RO01536
SE_14636	chr19:2040442-2045353	CD4_Memory_Primary_7pool
SE_17004	chr19:2040449-2043860	CD4p_CD225int_CD127p_Tmem
SE_17626	chr19:2038511-2053432	CD4p_CD25-_CD45RAp_Naive
SE_17917	chr19:2039716-2046074	CD4p_CD25-_CD45ROp_Memory
SE_19564	chr19:2040314-2043614	CD4p_CD25-_Il17p_PMAstim_Th17
SE_20037	chr19:2040265-2045959	CD56
SE_20925	chr19:2040439-2043671	CD8_Memory_7pool
SE_22582	chr19:2040027-2045973	CD8_primiary
SE_23148	chr19:2041041-2042190	Colon_Crypt_1
SE_23772	chr19:2040583-2042161	Colon_Crypt_2
SE_26566	chr19:2038851-2054518	Esophagus
SE_28069	chr19:2041075-2043659	Fetal_Intestine
SE_29067	chr19:2041130-2042179	Fetal_Intestine_Large
SE_29903	chr19:2038980-2043719	Fetal_Muscle
SE_31409	chr19:2039554-2043801	Gastric
SE_34292	chr19:2040146-2043783	HCT-116
SE_34839	chr19:2040778-2043696	HeLa
SE_39943	chr19:2041166-2042128	K562
SE_40728	chr19:2038229-2042194	Left_Ventricle
SE_41572	chr19:2039433-2042154	LNCaP
SE_42204	chr19:2038847-2043975	Lung
SE_46685	chr19:2040488-2042149	Ovary
SE_47494	chr19:2040679-2042159	Pancreas
SE_48086	chr19:2036911-2052819	Psoas_Muscle
SE_48699	chr19:2039394-2042259	Right_Atrium
SE_49469	chr19:2040173-2042145	Right_Ventricle
SE_50075	chr19:2040555-2043826	Sigmoid_Colon
SE_51187	chr19:2038576-2052883	Skeletal_Muscle
SE_52407	chr19:2040471-2043814	Small_Intestine
SE_53798	chr19:2037650-2053000	Spleen
SE_54890	chr19:2040287-2043946	Stomach_Smooth_Muscle
SE_55272	chr19:2040920-2042139	Thymus
SE_57445	chr19:2040906-2042151	VACO_503
SE_59032	chr19:2040556-2063003	Ly3
SE_59944	chr19:2041147-2096724	Ly4
SE_60429	chr19:2041140-2096762	DHL6
SE_65305	chr19:2038632-2051258	Pancreatic_islets
SE_68856	chr19:2040490-2042205	H9

Enhancer Sequence

GTTCTGGGGA CATAGAACAC AGGGGAGCTT AGACCTGCCC AAGGGCCTGG ATACTGTGCA 60
CTGACACGTG GCTCCAACCG GACCCCAACC AGGCCCTAGA CCAGGCCCTA GACCACGCAC 120
GCCTGGGGCA GAGGGGGCTG GGAGCCGGAC CAGGAGAGTC AGCTCCACCC AAGTGGAGCT 180
GGATTTACAA AAAAGCAGCT CTGAGGGACC TGGTTCCAGG GACCACAGGC CACAGATGCT 240
GAGCCTTAAG CCGCGGGCAG GGAGCCTGAG CCTGATCCCC CCAAACCAGG GGCCTCACTC 300
CACCTCTCAG CTCTCTGAAC CCTGTCTGGG GTTTCCCTTG GGCAGGCAAA CCTGAAAAGC 360
CTTCGGGAAA CTGGCAGACA GGGCGGCACT GCCCTGTGGA TGGCATCAGG GAGTAGGGCA 420
CACCGGGCAG GTCCCCAGGG GTTAGGGGGA GTACAGAGTA GGTCCCCGGG GGTCTGGGGA 480
GCACACAGGG CAGGTCCCCG AGGGTTAGGG GGTGGTCAGG GGGCAGGTCC CCTGGACTTA 540
GAGGGTGCGC AGGGCAGGTC CCCTGGGGTT AGGGGGTGTT CAGGGCAGGC CCGGGGGAGG 600
AGGGTGCCCA GGAGAGGAGG GTGCGCGGGC 630