EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-05059

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr1:155931700-155931890

Target genes

Number: 37
Name	Ensembl ID

ASH1L	ENSG00000116539
MSTO1	ENSG00000125459
RP11	ENSG00000203761
DAP3	ENSG00000132676
YY1AP1	ENSG00000163374
GON4L	ENSG00000116580
SYT11	ENSG00000132718
RIT1	ENSG00000143622
SNORA42	ENSG00000207475
SCARNA4	ENSG00000252808
KIAA0907	ENSG00000132680
RXFP4	ENSG00000173080
ARHGEF2	ENSG00000116584
SSR2	ENSG00000163479
UBQLN4	ENSG00000160803
LAMTOR2	ENSG00000116586
RAB25	ENSG00000132698
MEX3A	ENSG00000254726
LMNA	ENSG00000160789
SEMA4A	ENSG00000196189
SLC25A44	ENSG00000160785
PMF1	ENSG00000160783
BGLAP	ENSG00000242252
PAQR6	ENSG00000160781
SMG5	ENSG00000198952
TMEM79	ENSG00000163472
C1orf85	ENSG00000198715
VHLL	ENSG00000189030
C1orf182	ENSG00000163467
CCT3	ENSG00000163468
MEF2D	ENSG00000116604
IQGAP3	ENSG00000183856
TTC24	ENSG00000187862
APOA1BP	ENSG00000163382
GPATCH4	ENSG00000160818
NES	ENSG00000132688
MRPL24	ENSG00000143314

dbSUPER

Number of super-enhancer constituents: 37
ID	Coordinate	Tissue/cell

SE_00371	chr1:155930284-155933365	Adipose_Nuclei
SE_01845	chr1:155931238-155933194	Aorta
SE_02626	chr1:155931217-155933159	Astrocytes
SE_03231	chr1:155931279-155933168	Brain_Angular_Gyrus
SE_03962	chr1:155931212-155933183	Brain_Anterior_Caudate
SE_04939	chr1:155929250-155933328	Brain_Cingulate_Gyrus
SE_05884	chr1:155929293-155933471	Brain_Hippocampus_Middle
SE_06771	chr1:155929354-155933357	Brain_Hippocampus_Middle_150
SE_07892	chr1:155929156-155933508	Brain_Inferior_Temporal_Lobe
SE_08811	chr1:155931425-155931886	Brain_Mid_Frontal_Lobe
SE_09348	chr1:155929538-155933341	CD14
SE_10611	chr1:155931752-155932422	CD19_Primary
SE_13030	chr1:155931233-155931774	CD34_Primary_RO01480
SE_14255	chr1:155931237-155932047	CD34_Primary_RO01549
SE_19282	chr1:155931195-155932652	CD4p_CD25-_Il17p_PMAstim_Th17
SE_27178	chr1:155931316-155933203	Esophagus
SE_32195	chr1:155931276-155933013	Gastric
SE_34744	chr1:155929320-155933460	HeLa
SE_36575	chr1:155929457-155933178	HMEC
SE_37367	chr1:155929322-155933279	HSMMtube
SE_40938	chr1:155931234-155933205	Left_Ventricle
SE_42293	chr1:155931224-155933226	Lung
SE_45406	chr1:155931188-155931985	NHLF
SE_47089	chr1:155931365-155931982	Ovary
SE_48803	chr1:155931237-155933107	Right_Atrium
SE_50236	chr1:155931252-155933135	Sigmoid_Colon
SE_51497	chr1:155930111-155933032	Skeletal_Muscle
SE_52309	chr1:155931299-155932553	Skeletal_Muscle_Myoblast
SE_53045	chr1:155931277-155932694	Small_Intestine
SE_53512	chr1:155931234-155933166	Spleen
SE_56150	chr1:155929677-155933063	u87
SE_57594	chr1:155931283-155931785	VACO_503
SE_58809	chr1:155914126-155961123	Ly1
SE_59715	chr1:155907656-155970179	Ly4
SE_61625	chr1:155913651-155954372	Toledo
SE_62496	chr1:155912775-155960919	Tonsil
SE_64071	chr1:155931285-155933023	HSMM

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I155958

chr1

155928711

155933129

Enhancer Sequence

CTGGCACCGG GGGTTGGCAT GGGGAACGGC TCAACCAGTT TCACTCACAC CCCAGTTCCC 60
ATCGTGTCTT GATTCCACCT TTAGAGGCTG CCCAGGGTTT CACACCCGAC CCCACCCTTC 120
CTGTGGTCAT ACCGAGCCTT TCCTCACCCC AGGTGGCCGT CTCCCAGTGG CCCTCTCCTG 180
GGCCTGCCTA 190