EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-04908

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr1:153507840-153508420

Target genes

Number: 17
Name	Ensembl ID

BX470102.3	ENSG00000238279
S100A6	ENSG00000197956
S100A5	ENSG00000196420
S100A3	ENSG00000188015
S100A4	ENSG00000196154
S100A2	ENSG00000196754
S100A16	ENSG00000188643
S100A14	ENSG00000189334
S100A1	ENSG00000160678
CHTOP	ENSG00000160679
S100A13	ENSG00000189171
SNAPIN	ENSG00000143553
ILF2	ENSG00000143621
NPR1	ENSG00000169418
RP11	ENSG00000235015
INTS3	ENSG00000143624
SLC27A3	ENSG00000143554

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

SP2	MA0516.2	chr1:153507910-153507927	ACTAGCCCCGCCTCCTT	+	6.16
SP4	MA0685.1	chr1:153507911-153507928	CTAGCCCCGCCTCCTTT	+	6.13

dbSUPER

Number of super-enhancer constituents: 17
ID	Coordinate	Tissue/cell

SE_02992	chr1:153505256-153509805	Bladder
SE_23261	chr1:153504005-153510310	Colon_Crypt_1
SE_23926	chr1:153504577-153510216	Colon_Crypt_2
SE_25303	chr1:153504542-153510272	Colon_Crypt_3
SE_27244	chr1:153504541-153511424	Esophagus
SE_28418	chr1:153503754-153509884	Fetal_Intestine
SE_34563	chr1:153504562-153511814	HCT-116
SE_34861	chr1:153504183-153511816	HeLa
SE_36529	chr1:153505639-153509599	HMEC
SE_42984	chr1:153504009-153510224	Lung
SE_45398	chr1:153504632-153509472	NHLF
SE_50326	chr1:153503987-153511480	Sigmoid_Colon
SE_52579	chr1:153504053-153510359	Small_Intestine
SE_57480	chr1:153505212-153509794	VACO_503
SE_58061	chr1:153508008-153509263	VACO_9m
SE_65027	chr1:153505280-153509814	NHEK
SE_68094	chr1:153505033-153542157	TC32

Enhancer Sequence

CAGCAGAGGG CCTAGTCAGT GCCATGGGAG CAAGGACTTC TCACCCACAC ACCCCAATAA 60
TGCTGCCTGC ACTAGCCCCG CCTCCTTTGG AACCACCCAG TCTCAGGCCA CACACAATGG 120
CATCAGGAGA CAGCCCAGGG CTTGAAGGGG AAGGAGAGAG CACACTAGGG CCAAGGCAAG 180
AGAGGTGGCT TAAGGATTCT AAGAAGCATA TAGGAACAGT AGCTTTGGGC ACAGCTGAGA 240
ACTGTCCTTC AGGGGATCCA GAAGTTGAGG AGTATGGCTG GGCAGGGGAG GGGAATGGAG 300
GCTGCAAAGG CAGCTTAAAC ACAGCTTCAC AGGGCCACAC ATGGTGGCAA TGACACACCC 360
AGGGCACTCC CTTCCGCACC CCAAAAGAGC ACACCCCATT GCGATCCCTT AGCCCAAGGC 420
CTGCCTGGCA CAGCACTGCT GCTCCTGACT ATCCCTCCAG CGGGGGAGCG CCACAGATGG 480
CCCCAGTCTG GATCCAGCGG CTGAACTGGG CAGGGGATGG CTGGACCCCC AGCGTGAGGG 540
CAGCTGGCCC TGGAAAGTAC CCAGGGCTCC TGGAGAGAAC 580