EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-01743

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr1:29064190-29064770

Target genes

Number: 16
Name	Ensembl ID

RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNORA61	ENSG00000207311
SNORA44	ENSG00000207314
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
RP11	ENSG00000229388
RNU11	ENSG00000209804
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
EPB41	ENSG00000159023

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr1:29064395-29064415	AGGGTGGGGGTGGATTGGGT	-	6.93
SP1	MA0079.4	chr1:29064245-29064260	TGGGGGCGGGGTCTC	-	6.16
SP4	MA0685.1	chr1:29064243-29064260	GGTGGGGGCGGGGTCTC	-	6.07
Sox3	MA0514.1	chr1:29064459-29064469	CCTTTGTTTT	+	6.02
ZNF263	MA0528.1	chr1:29064510-29064531	GGGGGAGGGGAAGCGGGAGGG	+	7.43

Enhancer Sequence

AAAGGTAAGT CCCGCTCCGC CGGTGGCCCT GAGCCGGGAG GGGGACGCGG GGCGGTGGGG 60
GCGGGGTCTC CGGGAAGCGC CCCGGGCGGA GGACCTTTCG GAAGCCGCTT AGTTCGCAGG 120
TGCCGCACAC TTAAGTATTT TGACCCTTTC GGTGTGTTCT TGCAGCTGGC GAACAGCTTT 180
TTCGCTAACA AGGAGTAATT CATTAAGGGT GGGGGTGGAT TGGGTTTTGA AACGCTCCAG 240
GTCCTTAGTT TCCTGTAGGT CTTAGAAGGC CTTTGTTTTT CATCCTCGTG GATCACTCTC 300
TGGAAGTACT CTCATGTGAT GGGGGAGGGG AAGCGGGAGG GAATGGAAAT CCAGAGGAGC 360
CAATAAAATG ACCTTTTTAG ATCAACTTGC TCTGGGTGGA GGGGGACATT TTCACTGGCG 420
ACTGTCGCTT CAGCATTCAC TGTCATCTCT TACCCTTTTG AAGTTCAATC TTACGTGCTT 480
TGTTAACTAG TAAGGTTTTT CTCTGGTTAG CATATATGAA CTAATTTGAA AGGAAGATTG 540
TAGGATTGGG ACACTCCTAA TTGAATTTTT TTTTCTTTAG 580