EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-01343

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr1:24117740-24119140

Target genes

Number: 17
Name	Ensembl ID

HNRNPR	ENSG00000125944
C1orf213	ENSG00000249087
ZNF436	ENSG00000125945
TCEA3	ENSG00000204219
ID3	ENSG00000117318
MDS2	ENSG00000197880
RPL11	ENSG00000142676
AL031295.1	ENSG00000244609
TCEB3	ENSG00000011007
RP5	ENSG00000236810
PITHD1	ENSG00000057757
LYPLA2	ENSG00000011009
GALE	ENSG00000117308
HMGCL	ENSG00000117305
FUCA1	ENSG00000179163
RP11	ENSG00000229106
SRSF10	ENSG00000188529

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RREB1	MA0073.1	chr1:24118633-24118653	GGATGGGGGCTGGGTGGGGG	-	6.48
ZEB1	MA0103.3	chr1:24118010-24118021	GGGCAGGTGGG	-	6.14

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

SE_23543	chr1:24117024-24120631	Colon_Crypt_1
SE_31820	chr1:24116054-24129044	Gastric
SE_40122	chr1:24115385-24119338	K562

Enhancer Sequence

GTACCCAGCC GGCGGCTGCG GAGGATGGGC GTGTAGGGGG AGGTCGGCCT CGGGAGGGTC 60
CCGGAGAGCG GGGAGGGGGA ACCGTGATGG GGGGGATGGG GGTGGGGAGT GAGGTGCGAA 120
GGCGCTGTCC AGTCTTGGGG ACTTCGGGAG TGGAGCGGGG CTAGGCAAGG GGGTGTCTGA 180
GTATAAAGAG ACAGACTTCA GGGTCGGAAA TAGAAGAGCC CATTGTGGGG CGGGGGCTTC 240
CCCAGAGTCA AAGGTACAAA GCTTTATTGT GGGCAGGTGG GAGTCCTGGG TCAGGGTAGA 300
AAATTTCACT GGGTAGGGTG ACCTTTGGTC AGAACAGAAG TTCCCATTGT GGGGAGCGGG 360
AGATCCTGGG TCAGGGTGGA AGTTCTCAAG GTGTATAGAG AGAGACAGGT CAGGGGGAAG 420
GCACCCCTCC GAGGAGGGAG CCTGGGCGGG AGGTGCAAGT CCCCACGGTG GAGAAGGAAG 480
GGAATCGCAG CTCAGGGCAG GAGGTGCATT CCCCATGGGA AGAGGAACCC CGGGTCACAG 540
GTGAACGATC CCATTGTGGG GAGCTGCCCT CAGGGGTCAG AGATGGAAGG TGAGGCCAGT 600
TGGGAGGGGT GGGCAGGCAC TTGAGGCAGG TAGTGGAAGC TTCCGGCGAG TTTGGAGGAC 660
GCCGAGGATG GGGAGGGGCC AGCCAGCCTG ACATTCTTTT GTGTGTTTGG GAGTCCCAGA 720
GCGTGGTCAA GCCAGGGCTC GTTTGCAGTC AGTGGCAGCA GCAGCAGGTA GCTCCGTTTA 780
GGGGGGGCGT GGAGCACCAG TTTGGGGGTG GGTGGAGTTC TTACGCTTTC TGGGGACATG 840
GGCAGCCCCC TGGGGGTCTG GGAATGGATG GGCCAGAAAC TGCTGTGAAG GCTGGATGGG 900
GGCTGGGTGG GGGGAGGTTG AGATGGGGGT TGGAGGCGGC ACTGAGTAGG GGATGGAAGC 960
TCCTTTCCCT GGCACTTTTC TCTCCATTTC CCATAGGGCC CGGAGTTGGG GAGGCAGGGA 1020
CCCAGGGATG ATTGGAGAGG AGGGGGAAGG CACTCACCCC TGAGGAGTTA GAGGGGGAAT 1080
GAAGCAGGCG TGCCGCTGCC TCCCCTCTGC CCCCTGCCCT ACAGTCCCTA TGCCCTGCCT 1140
CTGCCTGTCT CCAGCAAGCT CAGGTCCTGT GGTTGGGCCA GAACCAGAGA CACATGTTCT 1200
GGGCCACTAG GGAGGCTGTC TCTGCCTTTC AGCCCTGGAA CTGAGGCAGA CTTCTTCTCC 1260
TGTGCCCTGG GACTTCTTGC TTGACTATTC TTTGTGCCCA GGACAGAACC TGGGTGCTGT 1320
GTGGGGCTGA TGGCCTGGTG GCCTCTTGGG CCAGGAGTGT GTCCTGTGCC TGGTTTTGCT 1380
CTTGACCGCC GCCCCGATGT 1400