EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS105-00021

Organism

Homo sapiens

Tissue/cell

IMR90

Coordinate

chr1:880180-880430

Target genes

Number: 36
Name	Ensembl ID

AL669831.1	ENSG00000197049
NOC2L	ENSG00000188976
CICP3	ENSG00000229376
RP11	ENSG00000224956
RP5	ENSG00000240409
MTND1P23	ENSG00000225972
MTND2P28	ENSG00000225630
SAMD11	ENSG00000187634
PLEKHN1	ENSG00000187583
C1orf170	ENSG00000187642
HES4	ENSG00000188290
ISG15	ENSG00000187608
AGRN	ENSG00000188157
KLHL17	ENSG00000187961
FAM87B	ENSG00000177757
LINC00115	ENSG00000225880
FAM41C	ENSG00000230368
C1orf159	ENSG00000131591
TTLL10	ENSG00000162571
SDF4	ENSG00000078808
B3GALT6	ENSG00000176022
UBE2J2	ENSG00000160087
SCNN1D	ENSG00000162572
PUSL1	ENSG00000169972
ACAP3	ENSG00000131584
CPSF3L	ENSG00000127054
GLTPD1	ENSG00000224051
DVL1	ENSG00000107404
MXRA8	ENSG00000162576
AURKAIP1	ENSG00000175756
CCNL2	ENSG00000221978
RP4	ENSG00000224870
MRPL20	ENSG00000242485
ATAD3B	ENSG00000160072
ATAD3A	ENSG00000197785
SSU72	ENSG00000160075

TF binding sites/motifs

Number: 4

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

KLF4	MA0039.3	chr1:880407-880418	CCACACCCTCT	+	6.02
Klf1	MA0493.1	chr1:880405-880416	GGCCACACCCT	+	6.32
Lhx3	MA0135.1	chr1:880269-880282	TAATTAATTTATC	+	6.11
mix-a	MA0621.1	chr1:880267-880278	ACTAATTAATT	-	6.62

dbSUPER

Number of super-enhancer constituents: 2
ID	Coordinate	Tissue/cell

SE_68417	chr1:838905-881008	TC71
SE_68418	chr1:838905-881008	TC71

Enhancer Sequence

CTGCGGGGAG AGATGGAGGC TACATAAATT TTGCTTTATC AGGAAGAAGC CAGCCTTAGA 60
GGTTACTCAT CACTAATTAA TCACGGCACT AATTAATTTA TCCCTGTTGC TGGCTGCCAG 120
AGAACAGAGC ATTTGGCCTG GCCTTCCCAG GGAGGGAAAA GCCTGGCCCA GAGCCCCACG 180
CCCCCCGCCC ACGTGGCTCT GCCCTCCCGC CAGATGGGCT CACAGGGCCA CACCCTCTCA 240
CCCCAAGACC 250