EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS101-00944

Organism

Homo sapiens

Tissue/cell

HT29

Coordinate

chr1:28680150-28681970

Target genes

Number: 28
Name	Ensembl ID

MAP3K6	ENSG00000142733
GPR3	ENSG00000181773
WASF2	ENSG00000158195
PPP1R8	ENSG00000117751
RPA2	ENSG00000117748
SMPDL3B	ENSG00000130768
XKR8	ENSG00000158156
RP11	ENSG00000227050
EYA3	ENSG00000158161
RP5	ENSG00000228589
PTAFR	ENSG00000169403
DNAJC8	ENSG00000126698
ATPIF1	ENSG00000130770
SESN2	ENSG00000130766
MED18	ENSG00000130772
PHACTR4	ENSG00000204138
RCC1	ENSG00000180198
SNHG3	ENSG00000242125
SNORA73A	ENSG00000201808
SNORA73B	ENSG00000200087
PRDX3P2	ENSG00000231468
TRNAU1AP	ENSG00000180098
SNHG12	ENSG00000197989
RAB42	ENSG00000188060
TAF12	ENSG00000120656
GMEB1	ENSG00000162419
YTHDF2	ENSG00000198492
EPB41	ENSG00000159023

TF binding sites/motifs

Number: 5

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

GATA2	MA0036.3	chr1:28681102-28681113	TTCTTATCTGT	+	6.14
Gata1	MA0035.3	chr1:28681102-28681113	TTCTTATCTGT	+	6.62
IRF1	MA0050.2	chr1:28681088-28681109	TCTGAGTTTCAGTTTTCTTAT	+	6.21
IRF1	MA0050.2	chr1:28681914-28681935	AATTACTTTCTTTTTTTTTTT	+	6.73
Zfx	MA0146.2	chr1:28681723-28681737	CCGGCCTCGGCCTC	+	6.28

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I028350

chr1

28677288

28681588

Enhancer Sequence

TTAACACAGA GCTCAGAGTA AGCACTTTTA ATTTTTAGCT ATGATCATGA TCTTTTTTTT 60
TTTAGATGGG AGACTCTCTG TTGCCCAGGC TGGGGTATAG TGGTGCAATC TCAGCTCACT 120
GCAACCTCCG CCTCCTAGGC TCAAGCAATT CTCCTGCCTC AGCCTCCTGA GCAGCTAGGA 180
CTACAGGCAC ATGCCACCAC GCCCAGCTTT TTTATTTTTT TTTCCGTATT TTTAGTGGAG 240
ACAGGCTTTC ACCATGTTGG CCAGGCTGGT CTCAAAACTC CTGACCCCAG GTGATCTGCC 300
TGCCTCAGCC TCCCAAAGTG CTGGAATTAC AGGCTTGAGC CATCATGCCC GGCCGATCAT 360
GACCATTTAA ATTTTCATTA AGGTACTTCA TGCAGTGCTT GGCACATGGT TGATGCTCAA 420
ACCTATAGCT ATTGCAATAA GTTACCTACA GTTTCCAACT GCTAGGGTTA TGGCTTTGTT 480
ATTTATTTTT TAAAAATTGT TAGTGATTAA CACGATCTTT AGCCTAGTAC CTAGGAACTT 540
GTCTCATCAT CTTGGTAACT GACAAGGCCT GGCACCATGC CTGGCATCAT GCCTGGCACG 600
TAGTAGGCAC TCAGTACATA GCTGTTGAAT CATATTAAAT TGAAATGAAT ATCCATTCAG 660
ACATTAGCAC AAGAGCTGTG TCACTAAATA GCTGTCATTG CAAAATTTAC AGACAACAAT 720
GACACAGACA TGCTTGCATA GTTTGTAAGC CACGATTTCA ACTTCCTGCA TTGCAGACAT 780
CTCAATTAAT AATCCCATTC CACTCACATG ATCCTTAGAA AGAAAGGGCA AACTAATAGA 840
AATATCTGGT TTAGCAACTA AAAGAATGAG CTCTAGTCTA GGTAGATAGA GGCTTACATC 900
CTGGCTTCAA TATCACCTAG TGGGTCAGTT ACTTAATCTC TGAGTTTCAG TTTTCTTATC 960
TGTGAGAAGG GAATAATAAT AGAATCTATT TAATGAAGTT ATTGTGAGAA TAGTGCCTTC 1020
CAACTGCTGT TCTCTTTGCC TGAAACACTC GTTTCATGAA GGGTGAAACC CCATGTTTGG 1080
ATTTTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAGAGAG AGAGAGAGAG ACAGAGAGAC 1140
AGGGTCTCGC TCTGTCGCCC AGGCTGGAGT GAAGTGACTT GATCTTGGCT CAATGCAACC 1200
ATCGCCTCCC AGGCTCAAGC TATTCTCCTG CCTCAGCCTC CCAAGTAGCT AGGATTATAG 1260
GCATGTGTCA CCATGCCCAG CTAATTTTTG TATTTTTATT TATTTTTTGA AATTATCTTT 1320
TTTTCTTTTT TTCTTTTTTT TTTTTGAGAC AGGGTCTCAC TCTGTCACCC AGACTGGAGT 1380
GCAGTGGTGT GATCTCAGCT CATGGCAACC TCCGCCTCCC AGGCTCAAGG GGATTTTCCT 1440
GCCTCAGCCT CCCAAGTAGC TGGGATTACA GTCACGTGCC ACTACTGCCC AGCTAATTTT 1500
TGTATTTTTA GTAGAGTCAG GGTTTCACCA TGTTGGCCAG TCTGGTCTCG AACTCCTGAC 1560
CTCAAGTGAT CCACCGGCCT CGGCCTCCCA AAGTACTGGG ATTACAGGCT TGAGCTACCC 1620
TGCCTGGCCT CCATGTTTCA CCTTGTTAAT TCCCCCGATT TTTCAGCTTG ACTGTCACTT 1680
CTTCCAGAAT GCCTTCCCTG CCGCCCATGG TAGGTTGGGT TCACTGTTAT ACTCTCCCTG 1740
TAGCACCTGT CAATTACTCT TTATAATTAC TTTCTTTTTT TTTTTTTTTT TTTTTTGTGT 1800
GTGGAAATAG TCTTGCTCTG 1820