EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-19143

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr19:30135380-30138090

Target genes

Number: 5
Name	Ensembl ID

POP4	ENSG00000105171
C19orf12	ENSG00000131943
CCNE1	ENSG00000105173
URI1	ENSG00000105176
CTC	ENSG00000242100

TF binding sites/motifs

Number: 11

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

ESRRB	MA0141.3	chr19:30137183-30137194	AATGACCTTGA	-	6.32
Esrra	MA0592.2	chr19:30137184-30137195	ATGACCTTGAA	-	6.62
Esrrg	MA0643.1	chr19:30137184-30137194	ATGACCTTGA	-	6.02
IRF1	MA0050.2	chr19:30135484-30135505	CCTTTCTTTCTTTTTTTTTTT	+	6.1
IRF2	MA0051.1	chr19:30135801-30135819	TAATTACTTTCACTTTAC	-	6.05
Nr2f6(var.2)	MA0728.1	chr19:30138060-30138075	TGAACTCCTGACCTC	-	6.22
PBX1	MA0070.1	chr19:30136061-30136073	CCATCAATCAAA	+	7.22
RORA	MA0071.1	chr19:30137434-30137444	TGACCTTGAT	-	6.02
RUNX1	MA0002.2	chr19:30136972-30136983	AAACCACAGAG	-	6.14
SOX10	MA0442.2	chr19:30135945-30135956	AAAACAAAGGA	+	6.32
Sox3	MA0514.1	chr19:30135945-30135955	AAAACAAAGG	-	6.02

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH19I029645

chr19

30136708

30137322

Enhancer Sequence

TTGTTTAGCA TATAATCAAG AAATAACATA AAAATAGGCA ACCAGCAGCC CTCCGTACTG 60
CCCTGCCTAC GGAGTAACAA TTCTTTATTC CTTTACTTTC TTTTCCTTTC TTTCTTTTTT 120
TTTTTTTTTG AGACAGAGTT TCGTTCTTGT CACCCAGGAT GGAGTGCACT GGCGTGCTCT 180
CAGCTCACTG CAACCTCCAC CTCCCAGGTT TGAGCGATTC TCCTGCCTCA GCCTCCTGAG 240
TAGCTAGGAT TACAGGCACC TGCCACCATG CCCGGCTAAT TTTTGTATTT TTAGTAGAGA 300
TGGGGTCACC ATGTTGGCCA AGGTGATCTT GAACTCCTGG CCTCAAGTAA TCCACCCGCC 360
TCCCAAAGTG CTGGGATTAC AGGCATGAGC CACCACGCCC GGCCTTATTC CTTTACTTTC 420
TTAATTACTT TCACTTTACT CTATGGATTC ATCTTGAATT CTTTCTTGCG CGAGATCCAA 480
GAACCCTCTC TTGGGGTCTG GATCGGGACC GCTTTCCGGT AACACTATGG GACCCCTTGT 540
TATGACAGAG CAACAAAAAA AGACAAAAAC AAAGGAAAGG ACTATTTCTG GGAGGAAAAA 600
AGATCAAACA ATAGTAATAT TCCTACCAAA AAGTACACCA GAGTTGCCAC ACCCAAGACT 660
AGCCACACAA ATCCTTTTCT CCCATCAATC AAAATTTTGC AGAGAGAAAA ACGACAGTCA 720
TTTTTACTAT TTGCTTGACT GGATTTTACA GAGAGAGGCT GGGAGCCCGG CTGGTAAGAA 780
ATTCTTACCC TTCTGCCAGT TTGTCAGGTC CTGGGTTTCC TTCACTGCAG CTCCCAGGAG 840
AGCAGAATGG TGTCAGTCTC CTGCTCACAG TGCCAAAACT GTAGGGGCCG AGGGACAATT 900
TCTCCTTCTC CCTCTGAAGG TTTGCTGGAA AATCAACTGA ACAAGGCAGA TTAATTAGAG 960
AAAAGGCATG CACATGTATT AACATGCACG CGGAGGAGAA CCACAGAGTG ATTATCCTAC 1020
CCACCGTGCT GTACAGAAGC TTATATGCCA TGTTGGGGTT ACAGAAAAAA CAGGCAGAGG 1080
GGGCACTCAG AGCACGTCCA AAAATGGCTT ATGGCAGCAA ATCAGGTTAT AGCGGCAAAT 1140
CAGGTTATAG CGGCAAGGAG GGATTGGAGG GGAAGAAGAG AAGTCCTGGC TAGCATAGGT 1200
GGGCTTGTTA TGCAGATGAA GCCTCCCAGG TAGCAGTCCT CAGAATAGAT GGTGTTTCCT 1260
AAAGACTTTT AAAGGCGTCA GATTCTTTCC TAGATCTGGA CAGGGAAGAG ACTCAGAGAA 1320
AACCTGGCTG CATTAGTGCA GATGTTTTTT CTATAGATGC AAATCTCCCA CATAAAAGAC 1380
AGCTTTGCCA CTTCTGTTCA CAGGCCCTCT GAACAGTCAT CTCAGAATAT GTCAAAGAAG 1440
TGTATTTTGG GGTGAAATAT TTTGATTTCC TTCACCCCTA AAGAGAAATT CAACCCAAAT 1500
CAGCCAAAAA CTGTGTTGAG CCACTACTGT GGGTGTGCAC AACGGGAACG GAGCCCAATT 1560
TCCTGTCCCC GGGCCTGATA GCCAGGGAGC CAAAACCACA GAGAGAAATT GTATCGTGCC 1620
AAGAGATAGA GCAGGAACAC GAAAGAGCAT GGGCACTTCG GAAGTGTGTG AAAAGAGTGA 1680
GAAGTGTATC CAGCTCGTGC AGCCTAGGAG ATGCAGCTTG CCAAGTGGAG TGAATGCTGC 1740
CTTTCAGTGC TCTCACCTCT GCTGGGCATG TTTGTGCAGT GGCCAACTTG CTCAACCGTA 1800
TGCAATGACC TTGAAAAGAA GTCTCCTCTC TGAGCTTAGA ACTGAGTAAT GTCTCAAACT 1860
GAAAGAGAAT AAATACATGC TGGATTTGAG TTTGATGAGA CGCTGCCCAT TGAGAAAATC 1920
TGTTCTATGC CTTATGGGAT TAATTCAGGA ATAAGTAAAT TGAGTAAAGA GATTTGAACT 1980
CCAGATATTC AAAGAGCTCT TGACAAGGTG AAACCCTGCC TCTGATTGAG ACTGACTAGA 2040
GCCGGGGTCC TGTGTGACCT TGATGCTGAT GTAGGGGATG TGGGATAGGA CAGGGAAATC 2100
AGGGCAATCT TAATACCAGA GAAAGAAAAC AAGGGATTCA CTTTTTTTTT TTTTTTTGAG 2160
ACGGAGTTTC GCTCTTGTTG CCCAGTCTGG AGTGCAATGG TAGGATCTCG GCTCACTGCA 2220
ACCTCTTCCT CCTGGGTTCA AGCAATTCTC CTGCCTCAGC CTCCTGAGTA GCTGGGATTA 2280
CAGGCATAGT GCCACCACAC CTGGCTAATT TTTTTTTGTA TTTTTAGTAG AGATGGGGTT 2340
TCACCATGTT GGTCAGGTTG GTCTCGAACT CCTGACCTCA GGTGATCCAC CCACCTCAGC 2400
CTCCCAAAGT GCTGGTATTA CAGGTGTGAG CCACTGTGCC CAGCCTGGGA TTCTTTTTTT 2460
TTTTTTTTTT CTTTTTTGAG ATGGAGTTTT GCTCTTGTTG CCCAGGCTGG AGTGCAGTGG 2520
CGCAATCTCG GCTCACTGTA ACCTCCACCT CCTGGGTTCA ACTGATTCTC TTGCCTCAGC 2580
CTCTCTAGTA GCTAGGATTA CAGGCGCCCA CCACCACGCC CAGCTAATTT TTTGTATTTT 2640
TAGTAGAGAA GGGGTTTCAC TATGTTGGCC AGGCTGGTCT TGAACTCCTG ACCTCAGGTG 2700
ATCTGCCCAC 2710