EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS094-03277

Organism

Homo sapiens

Tissue/cell

hMADS-3

Coordinate

chr1:202344790-202346340

Target genes

Number: 12
Name	Ensembl ID

RP11	ENSG00000227048
NAV1	ENSG00000134369
IPO9	ENSG00000198700
SHISA4	ENSG00000198892
LMOD1	ENSG00000163431
TIMM17A	ENSG00000134375
SNORA70	ENSG00000206637
RNPEP	ENSG00000176393
ARL8A	ENSG00000143862
LGR6	ENSG00000133067
UBE2T	ENSG00000077152
PPP1R12B	ENSG00000077157

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

LHX6	MA0658.1	chr1:202346303-202346313	GCTAATTAGT	-	6.02
NFE2L1	MA0089.2	chr1:202345588-202345603	TTTGCTGTGTCATAG	-	6.13

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I202376

chr1

202345529

202345728

Enhancer Sequence

AAGGGATCCT CCCAAGTAGA TAGGTCTACA GGTGTGTGCC ACCATGCTCG AGTAATTTTT 60
TAATCTTTAT TTTGTAGAGA CAAGGTCTCA CGGTATTGCC CAGGCTGGTC TCAAATGCCT 120
GGCCTCAAGC AGTCCTCCCC CTCAGACTCC CAAAATGCTG GCATGAGCCA TGGCATCCCG 180
CCCCCACTTT GTTTCTTATA GCTTACCTGT CATAACACTT GTCATATAGT CTTATAGTTT 240
AATTTGTCAT ATATTCTTAT GGTCAATACA CTTTAGGCTC TGGGAAGGGA GGGAGTGTGC 300
CTAACTTATT CACTGTTATG TTAATTGCAT CTATGGCAGT ATCTATTAAG TCTTAGGCAT 360
TGGGAATAAA GATTTGTTCA ATGAATGAAC TGAGCAGAGG AAGGGGGTGG TGGCAAGAAA 420
AGAGCAGTGA GGTGTTCCAG TTGATAATTT AATAAGAATA ATCAGAGTTG GAATAATCAG 480
AATTTGTATT TCAAACCTTA TAACTTCCTT TGCTTAAAAA TATTTGATTT TCTTTCTTAA 540
TAATTCTTGT TTTAGGTTTT TTTTTATTAG TTAAACTTTG GTTGGTTAGG GCTTAACAGG 600
GAATTAGGAA TTTGATAGCA TGTTCTTACA TCTTTTAAAG ACCAAGAGAA CTAGAAGGAG 660
AGCATAAACC AGGATTTTAG ATGCTAAAAA TATTACAGAA TTTAGATCCT TGACCTTCAG 720
GGAGTGTATC AATGTGAGGA GTGCAACTGT TAGGAATAAG TGCCTTGGAT GTTGAAAGTT 780
CTTGCAAAAT TTAGACAATT TGCTGTGTCA TAGGTATTGA ATCAGCTGGA AGCAAACTGA 840
AAGTATAAAT TGAATGGATG GATAGAAACG TGAGTGGTAG TAAGAATAAA ACAAACTAAA 900
TTTTAAAAAC AGTTTAGGGA TTGGTATGAA AATACAATCT TATATATAAA GATTGCATCC 960
TTTTATAAGT TGTATGTGGA TTAAATAAAA TTAGTCTTAA TCATTTATTT GATGTAAAAA 1020
TTACCCTGGA AGTTGTTATT TGTAGTAAAG GAATATGGGA AGGATTATTA AAGTTTTTTC 1080
AATATAATAT AAATATTAAA TAATAGGATA GTGCACTAAC CAGAGTTCAT CAGAGACAAT 1140
TTTTTTCAAC CTTATACCTT TTTATTCTTT TTGAATGCTG GGAGGTGAAT CTTTTACACC 1200
AAGCTTGTCC AACCTATGGC CCCTGAGGCC ACGTGCGGCC CAGGACAGCT TTGAATGTGA 1260
CCCAACACAA ATTCATAAAC TTTCTTAAAA CATTATGAGA TTTTTTTGGC TTTTTTGTTT 1320
TGTTTGTGCT CATCAGCCAT CATTAGTATT AGTGTGTTTT ATGTGTAGCC CAGGACGATT 1380
CTTCCAATGT GGCCCAAGGA AGCCAAAAGA TTGGATACCC CTGTTAACAC CATTTGGTGA 1440
GCTAAGACAT GGTGTCATGA AAACAGTAAC AACTAGCTGT TTAAGGCGGG ATAATTATGG 1500
AATGAATACA CTGGCTAATT AGTGTAGATG TTCTGAGAAG ATAGAGGTTA 1550