EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS092-01044

Organism

Homo sapiens

Tissue/cell

HFF

Coordinate

chr1:32277120-32277800

Target genes

Number: 28
Name	Ensembl ID

PUM1	ENSG00000134644
SNRNP40	ENSG00000060688
ZCCHC17	ENSG00000121766
FABP3	ENSG00000121769
SERINC2	ENSG00000168528
RP11	ENSG00000215899
TINAGL1	ENSG00000142910
PEF1	ENSG00000162517
COL16A1	ENSG00000084636
BAI2	ENSG00000121753
SPOCD1	ENSG00000134668
AL136115.1	ENSG00000212673
PTP4A2	ENSG00000184007
KHDRBS1	ENSG00000121774
TMEM39B	ENSG00000121775
KPNA6	ENSG00000025800
RP4	ENSG00000250135
TXLNA	ENSG00000084652
CCDC28B	ENSG00000160050
IQCC	ENSG00000160051
DCDC2B	ENSG00000222046
EIF3I	ENSG00000084623
TMEM234	ENSG00000160055
MTMR9LP	ENSG00000220785
FAM167B	ENSG00000183615
HDAC1	ENSG00000116478
MARCKSL1	ENSG00000175130
BSDC1	ENSG00000160058

TF binding sites/motifs

Number: 8

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

Esrra	MA0592.2	chr1:32277187-32277198	TTGACCTTGAA	-	6.14
Nr5a2	MA0505.1	chr1:32277186-32277201	CTTGACCTTGAACCT	-	6.42
RFX1	MA0509.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	-	8.07
RFX1	MA0509.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	+	8.12
RFX2	MA0600.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	+	7.64
RFX2	MA0600.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	-	7.78
RFX5	MA0510.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	+	7.13
RFX5	MA0510.2	chr1:32277378-32277394	GGTTGTCATGGCAACG	-	7.45

dbSUPER

Number of super-enhancer constituents: 3
ID	Coordinate	Tissue/cell

SE_03641	chr1:32276147-32278952	Brain_Angular_Gyrus
SE_05071	chr1:32274952-32281979	Brain_Cingulate_Gyrus
SE_06386	chr1:32274772-32281963	Brain_Hippocampus_Middle

GeneHancer

Number: 1
ID	Chromosome	Start	End

GH01I031810

chr1

32276148

32278952

Enhancer Sequence

AAAAAAGTTA AACTCATCTA AATGTCTGAA GACATGTCTA AAGTCACCCT GTACTAAGAG 60
GCAGAGCTTG ACCTTGAACC TGTCTGCCCC TGCCACAAGC CAGGCTGTCT CCAGGGGAAG 120
GTGCTAAGGC CCTAAACGGG GCTCCAGACC AGCCGGGCAC TGTGCCCCCC ATTGCCCAGG 180
CCCCACTCAG CCCTGTCTGC AACCACCCGC CTGTCCCTGT CACAGCCCAG ACTCAATTCT 240
TCTCCCGCAG CTGGTACTGG TTGTCATGGC AACGAGTTGT TTGGAAAGCT GTGGGATGAT 300
GGGCTGTGCC GCAGTCAAGG ATGGAGCCTG GAGGAGCCAG CAGTCATGGG CTGCTTCCAG 360
TCAAGCCAGG CAGGAAGCTG GCTCCACCAC CGCACTCAAA CCAGCCCCCT TAAAGGCTGC 420
AGACCCAGGA ATCCCAATTC TGGGCATCTG GTCCAAATAA ATCATGTGAA GAAGGGAGGA 480
GCCAGACGCA CAAGGATGGT CACCCCTGCA CTACTTACAG CAGGACGAAA TTGCTTATGT 540
CACTAACAGG TAACCTATTT GAGTATTTTT CTTGCACCAA GCACTGTGTT AAATGCCAAA 600
CATGTGTCAT CTCATTTCAT CCTCACCACC TCCCTAGGAG GTAAGCACTC TTCATACCCA 660
CATTTTGCAG ATGAGAGAAT 680