EnhancerAtlas 2.0: an updated resource with typical enhancer annotation in 600 tissue/cell types across nine species

EnhancerAtlas 2.0

Tag

Content

EnhancerAtlas ID

HS092-00855

Organism

Homo sapiens

Tissue/cell

HFF

Coordinate

chr1:27334100-27335150

Target genes

Number: 29
Name	Ensembl ID

EXTL1	ENSG00000158008
PDIK1L	ENSG00000175087
ZNF593	ENSG00000142684
CEP85	ENSG00000130695
CD52	ENSG00000169442
DHDDS	ENSG00000117682
RP3	ENSG00000223583
HMGN2	ENSG00000198830
RPS6KA1	ENSG00000117676
ARID1A	ENSG00000117713
PIGV	ENSG00000060642
ZDHHC18	ENSG00000204160
GPN2	ENSG00000142751
NUDC	ENSG00000090273
GPATCH3	ENSG00000198746
RP11	ENSG00000172746
OSTCP2	ENSG00000225294
TRNP1	ENSG00000253368
FAM46B	ENSG00000158246
SLC9A1	ENSG00000090020
WDTC1	ENSG00000142784
TMEM222	ENSG00000186501
MAP3K6	ENSG00000142733
GPR3	ENSG00000181773
WASF2	ENSG00000158195
AHDC1	ENSG00000126705
FAM76A	ENSG00000009780
C1orf38	ENSG00000130775
RPA2	ENSG00000117748

TF binding sites/motifs

Number: 2

JASPAR ID

Coordinate

Motif Sequence

Strand

-Log10(p-value)

RARA(var.2)	MA0730.1	chr1:27334366-27334383	AGGTAAAGTCAAGGTCA	+	6.14
RARA(var.2)	MA0730.1	chr1:27334377-27334394	AGGTCACAGAGCGGTCA	+	6.14

dbSUPER

Number of super-enhancer constituents: 8
ID	Coordinate	Tissue/cell

SE_26796	chr1:27330092-27340089	Esophagus
SE_31795	chr1:27334135-27335277	Gastric
SE_32801	chr1:27334062-27335195	H1
SE_36077	chr1:27334137-27340181	HMEC
SE_43164	chr1:27333900-27335258	Lung
SE_47963	chr1:27334501-27335190	Pancreas
SE_49333	chr1:27334053-27335236	Right_Atrium
SE_68709	chr1:27329993-27340195	H9

Enhancer Sequence

TTTAACTCCT GACCTCGTGA TCCACACACC TCCCAAAGTG CTGGGATTAT AGGCGTGAGC 60
CACCGCGCTC GGTGGTTTAA GTCTTAACCG TGCTATTCTA CCTCTCAAAC TGCTAGTAAA 120
ACAGTTCTGT ATCAGGCACT GTGCTAACTG CTCAAACGTG TTGGGAATAT GGTTAGCAGT 180
TCACATTCAT GACCACATTA ACCCTCCCCA TAATCCTACA TTTGAGTATT ATTTTGACTG 240
ATAGATGGAG GACCTCAGGT GCAGAGAGGT AAAGTCAAGG TCACAGAGCG GTCAGGCTGA 300
GACCAGAACC CAGGTTAGTT GGGATTCTCA AGTTCACCTA TGTCCTTTTG ACTACAATGC 360
ACTCATCCTA ACTCATCCTT ACAAGGACCC AGTGAGGCAA AAATTATATA CTTTTTTTGC 420
TCTCGGATGA GGAAACTGAG GCTTACAGTG GTGAAACAGC TAAGGCTCAG TGAAAACTCT 480
CAGCCTTCAG ACAGTCCCCA GGCCTGATGG CACAGGACAG ATAAACCTAT AAGTGGTCCC 540
TCCGCTGAGG TACCAGGTAG GGAGAAGAGT GAAGCTGGGG GTTGGGGACA TTCAGTTTTC 600
TCAGTAACCC AAAGTTGTCC TGAAAGTGAC CAGGCAGCAT TCCTGTCCTG AGTGATTCTG 660
CAACCCTGCC TTGCTGCCAA GTCAGCACCC AGCTCCAGAC CAGGCTGTTC TCCTTGCCTC 720
CCAGGGAATT ACTACAAAGA ATGCACCTAA GTGCTGAGAA GGCAAGCTGT GGTGGGGCAA 780
TCAGAGGCGG GCGGCGCCCT CCAGGAAGAC TTCCGGGAGG AGCAACTTTA CCAGGGGAAG 840
ATATTGTCAT GGCAATGGGA GGGTAAGCAA CTGGCCACAA GGAACACGGA GAATGGGGCG 900
TAAGCAGCTG GCCATCAGGA ACACAGAGGG TGGCAGAAGG AGGCTAGGCA TCTAATGAGT 960
GCCGAGCACT GGACCTTGTT GCCAGAATCT ATGGGGACAG GTGTCTTTTT TTTTTTGAGT 1020
CTGAGTCTGT CATCCAGGCT GGAGTGCAGT 1050